BAC Information

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BAC

Clone NameMSMg01-291F12
Chromosome14 (Build37)
Map Location 40,563,692 - 40,564,004
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291F12.T7 (MSMg01no291_f12.b1)MSMg01-291F12.TJ (MSMg01no291_f12.g1)
ACCAG420367AG420368
length739742
length of high quality
(start - end)
316 (37 - 352)275 (76 - 350)
definitionCHROMAT_FILE: MSMg01no291_f12.b1 PHD_FILE: MSMg01no291_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:07 2005CHROMAT_FILE: MSMg01no291_f12.g1 PHD_FILE: MSMg01no291_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAG
ATAAACTACTAAGGGAATGAAAAGATCTATCCACAAATAGACTAAAGATT
TTTCTTCTTATGCCCCGATGTCCAATCATAAAACATTGGTCAGAAAGAGA
AAATACAGCAAATAAAAAGAGAGATATGTTCAATGATCTCTTTATCTTCT
CTTGGTCTTTTCAAATCAGATTTATTCGAGCAATAGCTTTACATGAATTT
TTATAGTTAAGTAACACAATAAGAATAACAACAACAGGAAAGACTGAAAA
ATATTTTTAAAATTTCTAAAAAGTATATTTAAGCATCAACATAATAATAA
TCTTTTTATTATATACCCGATCCCTATGTAATTTATATAAACTATATTTG
AAAGACCCCCCCTGGAAAAAAAAAAACAAACATCACAGTTAGAAAATGGA
ATACATATTTAAACAGACAATTCTCAGTAGAGGAACTACAAATGATGGAG
AATCATTTAAAGAAATAGTGAACGTCCTTAGCCATTAGCCAAATGCAAAT
TAAAATTACCTTGAGATTTCATCTCACACCTGTCCAAAAGACTAATCTCT
ATGACACAAGATACAATTCATGATTGCAAGAATATACAAATAGAGGAACA
CTCTTCCATTGTTGGTGGGAGCATAAATTTTTACAGCCACTATGGACTAT
CAGTATGGTGGTTCGTCAGAATGACGAAAGTGATCTACG
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGAGACTAGGAAGAGTGTCCT
GAGTGCAGATGGGAGGCCCTCTCTGCTGCCTGTCGACATAGACACTAGGT
TCCTCTTACCTAACCCAACTGGGATCACAACACTCCTGAAGGTAGGGAGC
ACCCAAAGGTCTATCACCAGGCTCTAATAACAGGTCTCTGTGGGGCTAGG
AAGCATCCCACCAATCTAACTAATGTAAGAGAGGTCATCCAGGGCCCAGA
TGAGTTTCCCTCCGTGTTCCTGGAGAGACTTATGGAGGCTTTGCCCCCTA
TGACCATTGNNGTGATTCCANANACAANACCGATTATGGAATTTATAGAT
CAGTCTTACCCCCCCACAAAAAAAAAATACAAAAGCTAGAGGGATTGCTG
GACAAATCGGCAAGAAAGCACAGGTTGCTGATAAAGTATATCATAGTAGG
GAAACAGAGGAGGAGAAAGAAGAAGGACAGCTGAACGAACAGGAAAACCA
CGTATTTACTACGGGATAATAGCACAGCGAGCAACTTGCACCATATACTT
GGCCCTGTACCCCGAGAAACTAGAGAGTCTAGTAAGTTAGTACCAGCCAC
CCCCGATAACCTTTGGTTAACTATCAATGCGCTTACTGTACACCACAACG
CCCCTGGTTGACAGATTGCCCCCCGAATAACATGATGACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_f12.b1 MSMg01no291_f12.b1 CHROMAT_FILE:
MSMg01no291_f12.b1 PHD_FILE: MSMg01no291_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:07 2005
         (316 letters)



>mm_chr14_40563544_40564260
          Length = 717

 Score =  532 bits (275), Expect = e-155
 Identities = 304/315 (96%), Gaps = 5/315 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagataaactactaagggaatgaaaagatctatccacaaatagactaaagatt 64
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaatccacagataaactactaagggaatgaaaagatctatccacaaatagactaaagatt 402

                                                                       
Query: 65  tttcttctt---atgccccgatgtccaatcataaaacattggtcagaaagagaaaataca 121
           ||| || ||   |||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttt-tt-ttcaaatgaaacgatgtccaatcataaaacattggtcagaaagagaaaataca 344

                                                                       
Query: 122 gcaaataaaaagagagatatgttcaatgatctctttatcttctcttggtcttttcaaatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcaaataaaaagagagatatgttcaatgatctctttatcttctcttggtcttttcaaatc 284

                                                                       
Query: 182 agatttattcgagcaatagctttacatgaatttttatagttaagtaacacaataagaata 241
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agatttattcgagcaaaagctttacatgaatttttatagttaagtaacacaataagaata 224

                                                                       
Query: 242 acaacaacaggaaagactgaaaaatatttttaaaatttctaaaaagtatatttaagcatc 301
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 223 acaacaacaggaaagactgaaaaatattttaaaaatttctaaaaagtatatttaagcatc 164

                          
Query: 302 aacataataataatc 316
           |||||||||||||||
Sbjct: 163 aacataataataatc 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)