BAC Information

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BAC

Clone NameMSMg01-291F16
Chromosome14 (Build37)
Map Location 80,131,161 - 80,131,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
Downstream genePcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291F16.T7 (MSMg01no291_f16.b1)MSMg01-291F16.TJ (MSMg01no291_f16.g1)
ACCAG420374AG420375
length795820
length of high quality
(start - end)
177 (194 - 370)---
definitionCHROMAT_FILE: MSMg01no291_f16.b1 PHD_FILE: MSMg01no291_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:07 2005CHROMAT_FILE: MSMg01no291_f16.g1 PHD_FILE: MSMg01no291_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATATTCNTTTCTTTCCCCACAAACCAATTATCCCCCGACCNNNNN
NCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGTAATTCTCCTACAATCCTGTCATGGTAGAAACACTGGAA
TTACAGATATACACGCCCTTTTTTCCCCAAGAACTGATATAAGTTCAAGG
GATTTGAACTCAGATCTTCACGCTTGAATGGCAAACCCTTTGTCCACTGG
GCCACCTCTTTGGCCCCCCTGTTGGACTCTTATCTGTTGCTTCTCTCTCC
CTTCAGACCTGCTCTGTAGCTAAGGTTTTTCAGTTTCAGCTCATCCAGTA
TCTCACAGAGTTGTGCTGTTAGTTTATATGTTCCTAAAAGACCTTAGCTG
TCATTGGGTCCTCTTTTTTTAAGTTCAGCCCCTACCAGGTCCTGTAGAGT
GCATACTGTCTGGAATTTTACTTCCCCAGAAAAAAAAAAACCAATCCAGT
GGTCTTGGCAGGCTTTGTTCAGCTTGTCCAGGGCAGACTTCTTTGGTGGT
CCATACCTTCCTACTCAGAGTATAGACACTGATTAACGCTACTTACTGCT
TCCCCTCTGCCATTCCTGCGTCTCTGCTACTACAGCGTTACCGCTCTCTG
TTGCTTATACGGACTTGCATGAGCTCATTAATACATCGGCCAAGTAATCG
GACATTTGCATTTATAGAAATTGTACTGGAAAGCCTACGCCGTTACAACA
TAATCCTGAAATCACTCCTGATAATTTTAATTCAGGTTCTGTTTC
TTCTTTTCCTCCCTCTTTCGGTACCCCCCCCCCAANNNNNCNNNNNNNNT
TACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTCTCCAGGGAGGAGATCTG
AATATTTGGAAGGATTTAGGGTGACAAGAGACTTGTAAAAGACATAATCA
ATGGGTGCTTTCCTGACCTCCAGAGGAGCAAAGAAAAGACGAAAAAGGTG
ACAGTGACATGGAAGAGATATTTAATCTGAGGACCACCTCAATTCACCCT
GTCAATGCTTTAGTTGATGAACCATAAGCATAGCAATATGAAAAACTGCC
CCCACCGGGAGACCCCAATATGCCTTTTTTCCTGGCAATCTGCAACCTCT
TGGGCACGATCATATAAAGTTAGTTCCCCCCCCCCCCCCCAGCATCTGTT
GTTTATTTACTTATTTTTTTCCCCCCCGAGAGGTTATCAAAATAATCGTG
TGGGAGGCGCTTTGAAACCCTTCACTGAAAATCCCTTTGACAGGCACGAT
TCTCTCAATCCAGCTGGTTCGGGGTGCCAAAATGGATGATGACATGCTCC
CCTACGATTTTGCATCTTCCTATTTTCCTCCCCGTTCCTGTTAGCTGATC
TCTTCTCTGCGTTATCGGAACGGTTAAAAGATTGTTATCCGCCATAAAAT
CTACCGTGCTGTCCAAATTTGCCTGTTTACCACGTAACAAATACCCTCAT
TGATTTGGTTCCTATTTTATCACTTACTCAATTTGGCTTTATTCGACCAT
TTTAACCTTTTATTTCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_f16.b1 MSMg01no291_f16.b1 CHROMAT_FILE:
MSMg01no291_f16.b1 PHD_FILE: MSMg01no291_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:07 2005
         (177 letters)



>mm_chr14_80130961_80131537
          Length = 577

 Score =  319 bits (165), Expect = 5e-92
 Identities = 174/177 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaagggatttgaactcagatcttcacgcttgaatggcaaaccctttgtccactgggcc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ttcaagggatttgaactcagatcttcacgcttgaatggcacaccctttgtccactgggcc 260

                                                                       
Query: 61  acctctttggcccccctgttggactcttatctgttgcttctctctcccttcagacctgct 120
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acctctttggcccccctgttggtctcttacctgttgcttctctctcccttcagacctgct 320

                                                                    
Query: 121 ctgtagctaaggtttttcagtttcagctcatccagtatctcacagagttgtgctgtt 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtagctaaggtttttcagtttcagctcatccagtatctcacagagttgtgctgtt 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)