BAC Information

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BAC

Clone NameMSMg01-291M21
Chromosome14 (Build37)
Map Location 124,642,202 - 124,642,883
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291M21.T7 (MSMg01no291_m21.b1)MSMg01-291M21.TJ (MSMg01no291_m21.g1)
ACCAG420699AG420700
length762786
length of high quality
(start - end)
690 (62 - 751)523 (69 - 591)
definitionCHROMAT_FILE: MSMg01no291_m21.b1 PHD_FILE: MSMg01no291_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:41 2005CHROMAT_FILE: MSMg01no291_m21.g1 PHD_FILE: MSMg01no291_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TGTGTCTCCAAGGCAATCCTAAAGCACAGAAGTAGCAGAGTAGGTCAAAG
GCAGAAGAGGAAAATAATACAATGGCTGAGAAAAAATAAAGGGGTGAGTG
CTGACATGTTTTAATGCACCTTAGTACTCCTCTTGAGCTCTCATGTTTCA
TGACTACTAAAACCTTTCCTGACTGGGCTCAAAACTTCAACTACAAAATC
TAGCTCACATTCAGAAAATAAAGGTGAATATCAACTACACTCCTCTCAAG
CTGTATTACAGACTTGTTTCCTTTCTCTGTTCTCCTGTGAGTGCTTCTCA
TCCCTCTGTACAAACACAAGAGCTTTTCTGACACCCAAACCAGCCCTTCC
TCAGCCACAACACCTCACTGGCCCTCTTCCCTATAGCTAAAGTACATTCA
ACTCCACCTTTGCCTAGGGCAAACACCCATGCATAAGGGAATATTCCCAA
TGGGAATAGCATGTGCATCAAAAGCATTTTCTAGTCTTTTCCTTCACAAA
TTAATCCTTGTTTCTCTCTAGTTCCATTATCTTTCAAATCTCCAACATCT
TCTTGATGCCTCTATTTCTGAGCTATGGCCTAGTTCATTTTATACATGCT
GATTTTTTTTTCCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTG
GAACCTACTCTGTAGACCAGGCTAGCCTCAAACTCAGAAATTCGCTTGCC
TCTGCCTCCAAG
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGACCAAATGAAGCTCAAGAAGAAGGAAGA
ACAAAGTGTGGTTTCTTCCGTCCTTCTTAGAAGGGGGAACAAAATACTCA
TGGGAGCAAAAATGGAGATGAAGTGTGGAGCAGAAACTGAAGGAAAGACC
ATACAGAGACTGCCTCACCTCCAGATCTATCCCGTGTACAGTCACCAAAT
GCAGACACTATTGTGGATGCCAAGAAGTGCTTCCTGACAGGAGCCTGAAA
TAACTGTCTCCTGAGAGGCTCTGCCACAGCCTGACAAAAATACAGAGGCA
AATGTTCTCAACCAACCATTGGACTGGGCACAGGGCCCCCAATGGAGGAG
TTAGAGAAAGGACTGAAGGAGTTGAAGGGGTTTGCAGCCCCATAGGAATC
CCCAAAGCACCCAGGACTAAACCACCAACCAAAGAGTACAGATGGAGGGA
CCCATGGCTCTAGCCCCATATGCAGCAGAGGATGGCCTCTCAATGGGAGA
AGAGGCCCTTGGTCCTGTGAAGGCTAGATGCCCCAGTGTAGGAGAATGCC
GGGAGGTGGGGGCAGGATTGGGTGGGGTGGGAAGGAATACCCTCATAAAA
GCAGGGGGAGGGGAGGATGGGATAAAGCATTTTGGGAGGAGGGGACTAGG
TAAGGAGATAACATTTGAAAAGGAATTTAAGAAAAATCTCATATAAAAAT
ACACCCCCCCCCCGGATAAAAAAAATTCCAGGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_m21.b1 MSMg01no291_m21.b1 CHROMAT_FILE:
MSMg01no291_m21.b1 PHD_FILE: MSMg01no291_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:41 2005
         (690 letters)



>mm_chr14_124641993_124643082
          Length = 1090

 Score = 1237 bits (640), Expect = 0.0
 Identities = 673/684 (98%), Gaps = 5/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  aaagcacagaagtagcagagtaggtcaaaggcagaagaggaaaataatacaatggctgag 69
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 210 aaagcacagaagtagcagagtaggtcaaaggcagaagaggaaaataataaaatggctgag 269

                                                                       
Query: 70  aaaaaataaaggggtgagtgctgacatgttttaatgcaccttagtactcctcttgagctc 129
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaaaaataaagggatgagtgctgacatgttttaatgcaccttagtactcctcttgagctc 329

                                                                       
Query: 130 tcatgtttcatgactactaaaacctttcctgactgggctcaaaacttcaactacaaaatc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcatgtttcatgactactaaaacctttcctgactgggctcaaaacttcaactacaaaatc 389

                                                                       
Query: 190 tagctcacattcagaaaataaaggtgaatatcaactacactcctctcaagctgtattaca 249
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 390 tagctcacattcagaaaataaaggtgaatatcaaccacactcctctcaagctgtattaca 449

                                                                       
Query: 250 gacttgtttcctttctctgttctcctgtgagtgcttctcatccctctgtacaaacacaag 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gacttgtttcctttctctgttctcctgtgagtgcttctcatccctctgtacaaacacaag 509

                                                                       
Query: 310 agcttttctgacacccaaaccagcccttcctcagccacaacacctcactggccctcttcc 369
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 510 agcttttctgacacccaaaccagcccttcctcagccagaagacctcactggccctcttcc 569

                                                                       
Query: 370 ctatagctaaagtacattcaactccacctttgcctagggcaaacacccatgcataaggga 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctatagctaaagtacattcaactccacctttgcctagggcaaacacccatgcataaggga 629

                                                                       
Query: 430 atattcccaatgggaatagcatgtgcatcaaaagcattttctagtcttttccttcacaaa 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atattcccaatgggaatagcatgtgcatcaaaagcattttctagtcttttccttcacaaa 689

                                                                       
Query: 490 ttaatccttgtttctctctagttccattatctttcaaatctccaa-catcttcttgatgc 548
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 690 ttaatccttgtttctctctagttccattatctttcaaatctc-aagcatcttcttgatgc 748

                                                                       
Query: 549 ctctatttctgagctatggcctagttcattttatacatgctgattttttttt-cctgaga 607
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 749 ctctatttctgagctatggcctagttcattttatacatgctgattttttttttcctgaga 808

                                                                       
Query: 608 cagggtttctctgtgtagccctggctgtcttggaacct-actctgtagaccaggctagcc 666
           |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 809 cagggtttctctgtgtagccctggctatcttggaac-tcactctgtagaccaggctagcc 867

                                   
Query: 667 tcaaactcagaaattcgcttgcct 690
           ||||||||||||||||||||||||
Sbjct: 868 tcaaactcagaaattcgcttgcct 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)