BAC Information

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BAC

Clone NameMSMg01-291O18
Chromosome14 (Build37)
Map Location 113,367,553 - 113,367,737
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291O18.T7 (MSMg01no291_o18.b1)MSMg01-291O18.TJ (MSMg01no291_o18.g1)
ACCAG420785AG420786
length763754
length of high quality
(start - end)
296 (430 - 725)286 (69 - 354)
definitionCHROMAT_FILE: MSMg01no291_o18.b1 PHD_FILE: MSMg01no291_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:50 2005CHROMAT_FILE: MSMg01no291_o18.g1 PHD_FILE: MSMg01no291_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
AACATATATTTAGTCATGTATAATATCTTTAAAGTCCTATGGAACATAGA
TGTAATGTCCATTGCACAAATGATAGATGAGTAGCTAGGTTACAGAGTTG
TATGCATGCATATATCTGTCAGTCTCAAGGACACAAAGTATCTTTAGGTA
GAAGTTACTTTGCAGACATCATTCTTTTCATTAGTATTTACCTGTGTTGT
TTGATAAGAAGTAGCATAAGGATTTGGATGAATATGATCTGCTGTTAGTA
AATCTGGTTCTGGTAGAAATAACAGCCCTTAAGACTTGATTTCATGATTA
AAATTTATTTTGCTCGCCCCCGCCCGAAAAATAAAGGAAGAAGGTCTCTT
ATAGAACACCCTCCACTGAAAAGAGATATGGGTAGGAAACAAAATTAGTT
CTTGTTTGGGATTTAGCAAAGGTCCACACCATCAAATGGCAAGGTCCATA
CCATCAAACAAGGTCCACCATCAAATGGCAAGGTCCATACCATCAAATGA
CAAGGCTCACACCATCAAATGACAAGGCTCACACCATCAAATGACAAGCA
GAGCAGTTGCATGTTCCCCAATATAATTAACAATGACACTTAAATATCAC
ATAATATCATATTAGCATCTCCTGCCATTGGAGATACAAGGATACATGGG
AATGGCAACAAATCCATAGATATTATTGCCTGCAAAAGTAAGATATTAGA
ATTATATTAACAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTTTGATCCATGCCCATTCTTTAGTTGAGT
TATTTGGGTGTATCTTCTCTAACTTCTTGATTTCTTTCTATTTTGGATAT
TAGCCCTCTTTCAGATGTATAGTTGATGAAAATCTTTACCAAATCTCTAG
GCTGTTATTCATCTTATTGATGGTGGCCTTTGATTGACAGACGTTTTTGG
ATTCATGAGGTCCTACTTATTAAGCGCTGATATTAGAGACTGAGCCATTG
GTGTTGCAAGCAGGATCCCCTTTCACATCCTTGCATATCCCTTCACATCC
ACTCTTTTTTTTAACCACACACATCTCTTCTCCAGTACAACAGATGCAAT
CTTCATCCCCCCCCCCAGAGACTCCTTATAGACTAACTACAACTTCCTCC
TTACAGTTGCTTTACTGGATAGTTTTATATCAACTTACCCCAAGCTAGAA
TTAACTGAAAGGGCAATTCAGAAATGACTCCATAACAGTCAGCTTTAGAT
CATTTTCTTAATTAGAGATCAATGTAGGGGGGTCAGTGCCCATTGTTAGT
GGGGCTAACCCTGTTCTGGTAGTCCTGAGTTCTATAAGAAATCAGACTGA
GCAAGTCATGAGGAGCAAACCAGTAAGAAACACTCCTTACTGCTACTGCA
TCAGCTCTGGTTTCTAATTTCCTGCACTGTGTGAGTTCTTGTCCTGATTT
TATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_o18.b1 MSMg01no291_o18.b1 CHROMAT_FILE:
MSMg01no291_o18.b1 PHD_FILE: MSMg01no291_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:50 2005
         (296 letters)



>mm_chr14_113367244_113367937
          Length = 694

 Score =  279 bits (144), Expect = 2e-79
 Identities = 177/188 (94%), Gaps = 4/188 (2%)
 Strand = Plus / Minus

                                                                       
Query: 110 accatcaaatgacaaggctcacaccatcaaatgacaagg-ctcacaccatcaaatgacaa 168
           |||||||||  |||||| || |||||||||||| ||||| | ||||||||||||||||||
Sbjct: 494 accatcaaacaacaagg-tc-caccatcaaatggcaaggtc-cacaccatcaaatgacaa 438

                                                                       
Query: 169 gcagagcagttgcatgttccccaatataattaacaatgacacttaaatatcacataatat 228
           |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 437 gcagagcagttggatgttccccaatgtaattaacaatgacacttaaatatcaaataatat 378

                                                                       
Query: 229 catattagcatctcctgccattggagatacaaggatacatgggaatggcaacaaatccat 288
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catattcgcatctcctgccattggagatacaaggatacatgggaatggcaacaaatccat 318

                   
Query: 289 agatatta 296
           ||||||||
Sbjct: 317 agatatta 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 694
Length adjustment: 9
Effective length of query: 287
Effective length of database: 685
Effective search space:   196595
Effective search space used:   196595
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)