BAC Information

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BAC

Clone NameMSMg01-294A15
Chromosome14 (Build37)
Map Location 106,613,759 - 106,613,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52
Downstream geneLOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294A15.T7 (MSMg01no294_a15.b1)MSMg01-294A15.TJ (MSMg01no294_a15.g1)
ACCAG422318AG422319
length742737
length of high quality
(start - end)
234 (125 - 358)247 (69 - 315)
definitionCHROMAT_FILE: MSMg01no294_a15.b1 PHD_FILE: MSMg01no294_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:37 2005CHROMAT_FILE: MSMg01no294_a15.g1 PHD_FILE: MSMg01no294_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGTTTTTTTCTTTGCCAAGTTCTCACCGTTTCTTCAGTCAGATCAGAACT
ACATTGCTAATGATCCCACCATGGCAAGTGAAAAGATAAATGGAGTTTAA
CTCTGATTTGTGAGCTCTAAAAGGAAATAGACACCATAGATTTTTTTTTA
ATTGATCCAAGCCCAAGTTCAATGTGTTTAACCAGGAAACTGTTCATTCA
AATGAAAACCAAGAAGGTTCTCAAACCTAGTGTGTCTGAGACGGCAAAAT
CAACTCTAAACACAGCAGTTTCGCTTAGTAAATGTTGGGAGGAGAAACAG
CGCTTGCTCTAAGTCAGTGAACCGCAACAATCAGTGACATGCTCCTCATG
CTTCAGCTCCTATTTCTGATATCCTCAAGGTAAAGTAAACGTGATGTTAT
TGTAAAATTAGATTGACCTTCTCAGCAATCAAGAAGAGAATACCTTTCTA
AAAATTCAGGTTTCATTCTCAATTGTTACCTTTAGTATTCAATTAATTTA
TGCATGGTAGCTAATCTAAAAGACTGAGAATGAATGGTCCTGCCAGTTAA
TCATGTTTTACTGCACTCAGCTTTGTCCTACATATTTCATATATTTCCGA
GTAAATCTTCTTTATTGATTTAGGTTGTATAGAGTGACATTTTGCTTGAT
GATAATTATTGAAAAGGCATAAAGCAATATTGGAATGGACTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGACCCCCAGGATGATACAAAGAAACGGTG
TCTCAAAAAACATTGCCTCCTGCATCTATGTAACAGGTGTGCAGCTTGGT
CTTCATGCCCATCCCTAACAACTGCAGGTCTGTCCCTGAATCTGTTGCCT
GTCTGGATGGAGATCCGTTCCCCTAGCTGGGTCACCTTGTCTGGCTTCAG
TGGGAGAGGATGCTCTTAGTACTGCAGTTACTCTATGTGCTGGGGGAGGG
GAGAGGGAGGGAGAGGATAAGATCCGXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTGCCTGGATCCCCNAACAACCCCCCCGGAATCTGATTAGAGAGAA
GNTGTGACCCCCCCCCAAAAAAAAAAAAAAAAATGGGGGGCGGGGGGTCG
CCTATACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACTAACGTTTTGCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_a15.b1 MSMg01no294_a15.b1 CHROMAT_FILE:
MSMg01no294_a15.b1 PHD_FILE: MSMg01no294_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:37 2005
         (234 letters)



>mm_chr14_106613559_106614191
          Length = 633

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgaaaagataaatggagtttaactctgatttgtgagctctaaaaggaaatagacac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| 
Sbjct: 201 caagtgaaaagataaatggagtttaactctgttttgtgagctctaaaaggaaagagacat 260

                                                                       
Query: 61  catagatttttttttaattgatccaagcccaagttcaatgtgtttaaccaggaaactgtt 120
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataga-ttttatttaattgatccaagcccaagttcaatgtgtttaaccaggaaactgtt 319

                                                                       
Query: 121 cattcaaatgaaaaccaagaaggttctcaaacctagtgtgtctgagacggcaaaatcaac 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 cattcaaatgaaaaccaagaaggttctcaaacctagtgtgtctaagacggcaaaatcaac 379

                                                                
Query: 181 tctaaacacagcagtttcgcttagtaaatgttgggaggagaaacagcgcttgc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctaaacacagcagtttcgcttagtaaatgttgggaggagaaacagcgcttgc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)