BAC Information

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BAC

Clone NameMSMg01-297F20
Chromosome14 (Build37)
Map Location 92,625,934 - 92,626,604
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297F20.T7 (MSMg01no297_f20.b1)MSMg01-297F20.TJ (MSMg01no297_f20.g1)
ACCAG424715AG424716
length752754
length of high quality
(start - end)
707 (46 - 752)671 (77 - 747)
definitionCHROMAT_FILE: MSMg01no297_f20.b1 PHD_FILE: MSMg01no297_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:47 2005CHROMAT_FILE: MSMg01no297_f20.g1 PHD_FILE: MSMg01no297_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTATACCATTTTTAATAGAGTTATTTATTTTT
CTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCT
ATCTGATTTAGGATTGGTAAAGATCATTCCCCATCTGTTGGTTGCTGTTT
TGTCCTATTGACAGTGTCCATTGCCTTACAGGAGCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTAGAGCATAAGCATTGGTGTTCTGT
TCAGGAATTTTTTTCCTGTGCCTATGTGCTCAAGGCTCTTCCCCACTTTC
TTTTCTAGTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTACTTGATCCA
GTTAGACTTCAGCTTTGTACAAGGAGATGAGAATAGATCCTTTTGCCTTC
TTCTACATGCTAACCACCAGTTTAAACAGCACCATTTGTTGAAAATGCTC
TTTTATTCTACTGGATGATTTTTAGCTCTTTTGTCAAAGATCAAGTGACA
ATACGTGTGTGGATTCTTTTCTTATTCTTCAATCCTATCCCATTGATCTA
CTTGCCTGTCACTGTACCAAGATTACAGAGTTTTTATCAGGATTTTTCTG
TAGTATAGCTTTAGGTCAGGGATAGTGATTCCAACAGAAGTTTTTTTATG
AGGTAACCCAATCACAAAAGTACACAAATGTTATCCACTCACTGATAGGT
AG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAAGAGAATGCCTTGAAGCA
CCTTCTTGCTAAAGACAGGACACCTAGGAAATGTGTTCCAAGTTCAGCCA
AACAAAAACAGAAAGACTGCAATAACTATAGTAAAAGAGCCTCTTGTGGC
AGCAGAAACTTGTGTCATATGGGCCAAATTCACACATTTGGAGTCAATAC
GCTGCTGAACCTCATTAAGTTTGGATAATTTGGCTAGAAAAGTGAGGAGG
AAAGAGTAGCATTGCTATTTTAAGTTTGATAATTGGATGATACAATTTTC
TTAAAGATTGAGGTACGTTACATTTTTAAAAACTGAGAGGTAAATAAGGT
TACAAACAATTGATGGTGAAATAAACTTTGTTTTTTGTTTTTTTTGTTTT
TGTTTTTTGTTTGTTTGTTTGTTTGTTTTCCAGTTGTAGCATGTTTAGCT
TATGGAGACATTAAGTAAACACTTAATGCTCTGAGTCTATAATAGTTAGC
TTTGGAGTCTTCTAGCTATTAAAGTAAGCTCTTAATTAAAAATATTATCC
TAACTAAAATGTTTTAAACACTTTGATTATTTAAAATGAAAAAGAAAAAG
TGCTAATTCTCTGTATTAAGAACAACACGCTGATACTATGAAACTTAAAG
CAAAAATTCAATAATTCTAACAAGAATTATTGAAATAATGTTTGTGGACT
TTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_f20.g1 MSMg01no297_f20.g1 CHROMAT_FILE:
MSMg01no297_f20.g1 PHD_FILE: MSMg01no297_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:48 2005
         (671 letters)



>mm_chr14_92625897_92626967
          Length = 1071

 Score = 1297 bits (671), Expect = 0.0
 Identities = 671/671 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaaagagaatgccttgaagcaccttcttgctaaagacaggacacctaggaaatgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttaaaagagaatgccttgaagcaccttcttgctaaagacaggacacctaggaaatgtgt 649

                                                                       
Query: 61  tccaagttcagccaaacaaaaacagaaagactgcaataactatagtaaaagagcctcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tccaagttcagccaaacaaaaacagaaagactgcaataactatagtaaaagagcctcttg 589

                                                                       
Query: 121 tggcagcagaaacttgtgtcatatgggccaaattcacacatttggagtcaatacgctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tggcagcagaaacttgtgtcatatgggccaaattcacacatttggagtcaatacgctgct 529

                                                                       
Query: 181 gaacctcattaagtttggataatttggctagaaaagtgaggaggaaagagtagcattgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaacctcattaagtttggataatttggctagaaaagtgaggaggaaagagtagcattgct 469

                                                                       
Query: 241 attttaagtttgataattggatgatacaattttcttaaagattgaggtacgttacatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 attttaagtttgataattggatgatacaattttcttaaagattgaggtacgttacatttt 409

                                                                       
Query: 301 taaaaactgagaggtaaataaggttacaaacaattgatggtgaaataaactttgtttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taaaaactgagaggtaaataaggttacaaacaattgatggtgaaataaactttgtttttt 349

                                                                       
Query: 361 gttttttttgtttttgttttttgtttgtttgtttgtttgttttccagttgtagcatgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gttttttttgtttttgttttttgtttgtttgtttgtttgttttccagttgtagcatgttt 289

                                                                       
Query: 421 agcttatggagacattaagtaaacacttaatgctctgagtctataatagttagctttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agcttatggagacattaagtaaacacttaatgctctgagtctataatagttagctttgga 229

                                                                       
Query: 481 gtcttctagctattaaagtaagctcttaattaaaaatattatcctaactaaaatgtttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gtcttctagctattaaagtaagctcttaattaaaaatattatcctaactaaaatgtttta 169

                                                                       
Query: 541 aacactttgattatttaaaatgaaaaagaaaaagtgctaattctctgtattaagaacaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 aacactttgattatttaaaatgaaaaagaaaaagtgctaattctctgtattaagaacaac 109

                                                                       
Query: 601 acgctgatactatgaaacttaaagcaaaaattcaataattctaacaagaattattgaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 acgctgatactatgaaacttaaagcaaaaattcaataattctaacaagaattattgaaat 49

                      
Query: 661 aatgtttgtgg 671
           |||||||||||
Sbjct: 48  aatgtttgtgg 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)