Query= MSMg01no297_j20.b1 MSMg01no297_j20.b1 CHROMAT_FILE:
MSMg01no297_j20.b1 PHD_FILE: MSMg01no297_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:05 2005
(707 letters)
>mm_chr14_103750099_103751205
Length = 1107
Score = 1319 bits (682), Expect = 0.0
Identities = 700/706 (99%)
Strand = Plus / Plus
Query: 2 ggaattcttaagtgtttatcgatttttaaagagacagtatctgactgtgttacccaagct 61
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttaagtgtttattgatttttaaagagacagtatctgactgtgttacccaagct 261
Query: 62 agctccagacacctggtctcaggttatcctctgagtagctggaaccataggagtatcagg 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 agctccagacacctggtctcaggttatcctctgagtagctggaaccataggagtgtcagg 321
Query: 122 tttggtattcttttagatctttatcatattcagcaatactcagctgcttccatctataag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttggtattcttttagatctttatcatattcagcaatactcagctgcttccatctataag 381
Query: 182 catgaatatctaatgtttttttatattagtttttacatcttcctacagataacacacttg 241
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 catgaatatctaatgtttttttatattcgtttttacatcttcctacagataacacacttg 441
Query: 242 ggttctaacaggactgagttatatgtggacatttccattcttcgaaaattgcttgcaaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggttctaacaggactgagttatatgtggacatttccattcttcgaaaattgcttgcaaat 501
Query: 302 attacttcagttgtgtgaattccttaatatgtgtggatgcaaatcacaacctttttgaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attacttcagttgtgtgaattccttaatatgtgtggatgcaaatcacaacctttttgaaa 561
Query: 362 atcatgttcatgacatattgccagagtatgctttcttgaccaagatagaaagttgtataa 421
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcatgttcatgatatattgccagagtatgctttcttgaccaagatagaaagttgtataa 621
Query: 422 gatgtaactctgctaaggggaaagttaaatcatactgctcaagtttgaacacttcactat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gatgtaactctgctaaggggaaagttaaatcatactgctcaagtttgaacacttcactat 681
Query: 482 aaagccaagtctggtggttacccttgtagtaacagcactttggaagctgaggcaggagca 541
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaagccaaatctggtggttacccttgtagtaacagcactttggaagctgaggcaggagca 741
Query: 542 tagctaaaagtttgagtacagtttggattacatgatgaattataggtcaccctggactat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tagctaaaagtttgagtacagtttggattacatgatgaattataggtcaccctggactat 801
Query: 602 aaagtgaggctctttctcaacaatacaaaaagaaaaaatacaaaacctctactataatag 661
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaaatgaggctctttctcaacaatacaaaaagaaaaaatacaaaacctctactataatag 861
Query: 662 gtaacatttaggttgattttttttattattgagattaagtatattc 707
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtaacatttaggttgattttttttattattgagattaagtatattc 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no297_j20.g1 MSMg01no297_j20.g1 CHROMAT_FILE:
MSMg01no297_j20.g1 PHD_FILE: MSMg01no297_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:05 2005
(642 letters)
>mm_chr14_103920139_103921176
Length = 1038
Score = 1052 bits (544), Expect = 0.0
Identities = 589/606 (97%), Gaps = 5/606 (0%)
Strand = Plus / Minus
Query: 38 aaaaaaaaaaaaaaggatttaatacaattaaaatactttttaactgtctggttcatttta 97
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 706 aaaaaaaaaaaaaaggatttaatacaattaaaatactttttaa----ctggttcatatta 651
Query: 98 aattttaggaaccatcaaaggagccctgtgcatagtggatgacaagaaaagcccagacac 157
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 650 aattttaggaaccatcaaaggagccctgtgcatagtggatgacaaggaaagcccagacac 591
Query: 158 aagtaatcaggatgtttgtaagctcttgacacacaacggtgacctctctactccccgttc 217
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aagtaatcaggatgtttgtaggctcttgacacacaacggtgacctctctactccccgttc 531
Query: 218 ttcacctccttcttacttagagggagaaccacaagtttcagcctctgttgaagccacagg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttcacctccttcttacttagagggagaaccacaagtttcagcctctgttgaagccacagg 471
Query: 278 tgggcacagttcaggctattgaggctgaagaaaaggtccccgttttgcttagtctttttg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgggcacagttcaggctattgaggctgaagaaaaggtccccgttttgcttagtctttttg 411
Query: 338 cttccagctgctctgctctgaattaagatccacgcagaaggtaggagtggccatcttgta 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 410 cttccagctgctctgctctgaattaagatccacgcagaaggtaggagtggccatctcgta 351
Query: 398 ctcggccaagccataaagctcctgcaatcatcctgaattatctatctttaaacttttcct 457
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 350 ctcagccaagccataaagctcctgcaattatcctgaattatctatctttaaacttttcct 291
Query: 458 ttcagaagaataatgaagctcctgttattaaaaagttaagttctgtctggtgtggtggcg 517
|| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 290 tttagaagaataatgaagctcctgttattaaaaagttaagttgtgtctggagtggtggcg 231
Query: 518 cacacctttaaccccagcactcgggaggcagaggcgggcggatttctgagttcgaggcca 577
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cacgcctttaaccccagcactcgggaggcagaggcgggcggatttctgagttcgaggcca 171
Query: 578 gcctggtctacaaagtgagttccaggacaaccagggctacacagagaaaccctgtcttga 637
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 170 gcctggtctacaaagtgagttccaggacacccaggactacacagagaaaccctgtcttga 111
Query: 638 a-aaaa 642
| ||||
Sbjct: 110 agaaaa 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1038
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1028
Effective search space: 649696
Effective search space used: 649696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
