CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAAGACCGTGTGAGTTCTACTGACATTTGTGAAAGTGATTCTAA
AATATATGTTAAACACAGGACTCTACTCTTTTAAAAGCTGCCAACTATTA
ATGCTTCCTGGGGAAGGGAAAATATGTCTTCTCCAGGGACCTGACTTAGA
TCATCTTCTCACTGTTTATAAAGATCTATTCCCAGCCATTGCTCCTACAA
TCTCCATAGAATTACAACTCATTTTTATAAATTGGCTTAGTCCTGAGGCT
AGGCTTTACTATGACCTGTGGCTACAGTTTGTTGATTCTCAGGAAATTCT
CTTAGGTTTCCAACGAAATTCCTGCTTCAATCTCTCAGCTAGACATCTTT
GGAAATCTTCATATGCTTCCAACTGTTCCTGAATCTTTTACAGTCATTCT
GTAGCATGTATCTGTGTGTTTGTATATATAAACATATATGTATCTGTCTA
GGCACATATATATATATATATATATATGTGTGTGTGTGTATGCATATATA
TGTGTGTGTGTGTGTATGTCTGTGTCTATATACATATAGACATATGTAGA
TACATACCTACGTACATACATACATACATACATACATACATACATGTGTA
TGTAGATACATGCATACATAGAAGTCATACTGATATAGCTTCTGCCTAGC
TGTGATACAAGAAAATTATGACTATTTGATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTCTAACCCATTTT
TAATAGGGTGATTTGATTTTTTGGCGTCCAACTTCTAGAACTCTTTATAC
ATATTGGATATTATTCCCTTATAGAATTTAGGATTAATAAATATCCTTTC
CCAATCTGTTGGTTGGTGGCCTTTTTGTCTTATTGACAGTATCTTTTGCC
TTACAGAAGCCATGCAATTTTATTAAATCCCATTTGTCAATAGTTTTTCT
CTGTGCCCCATTTTCTCCTCTATAAGGAAGGACCATCCAGAGACTGCCCC
ACCTGAGGATCCATCCTATAAACAACCACCAAACCCAGATGCTATATTGC
ATATGCCAGCAAGATTTTGCTGACAGGATCCTGATATAGCAGTCTCTTGT
GAGGATATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTCATC
TATTGGTTGGCACACAGGGACCCCAATGAAGGATCTAGAGAATTTACTCA
AGGAGCTAAAGGGGTCTGCAACCCTATAGGAAGAACAACAATATGAAATA
ATGAGTATCCCCCAGAGCTCGTGTCTCTAGTTGAATTTGTAGCAGACTTC
GGTGTAGTAGGCCATTAATTGGAAGAGAGGTTCTTGGTCTTGTGAAGATC
ATATGCCCCAGTACAGGGGAATGCTGGGTCTAGGAAGCAG

Query= MSMg01no297_k14.b1 MSMg01no297_k14.b1 CHROMAT_FILE:
MSMg01no297_k14.b1 PHD_FILE: MSMg01no297_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:09 2005
         (560 letters)



>mm_chr14_112981284_112982243
          Length = 960

 Score =  980 bits (507), Expect = 0.0
 Identities = 543/559 (97%), Gaps = 8/559 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacaagaccgtgtgagttctactgacatttgtgaaagtgattctaaaatatat 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacaagactgtgtgagttctactgacatttgtgaaagtgattctaaaatatat 263

                                                                       
Query: 64  gttaaacacaggactctactcttttaaaagctgccaactattaatgcttcctggggaagg 123
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 264 gttaaacacaggactctactcttttaaaagctgtcaagtattaatgcttcctggggaagg 323

                                                                       
Query: 124 gaaaatatgtcttctccagggacctgacttagatcatcttctcactgtttataaagatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaaatatgtcttctccagggacctgacttagatcatcttctcactgtttataaagatct 383

                                                                       
Query: 184 attcccagccattgctcctacaatctccatagaattacaactcatttttataaattggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attcccagccattgctcctacaatctccatagaattacaactcatttttataaattggct 443

                                                                       
Query: 244 tagtcctgaggctaggctttactatgacctgtggctacagtttgttgattctcaggaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagtcctgaggctaggctttactatgacctgtggctacagtttgttgattctcaggaaat 503

                                                                       
Query: 304 tctcttaggtttccaacgaaattcctgcttcaatctctcagctagacatctttggaaatc 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctcttaggtttccaaccaaattcctgcttcaatctctcagctagacatctttggaaatc 563

                                                                       
Query: 364 ttcatatgcttccaactgttcctgaatcttttacagtcattctgtagcatgtatctgtgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcatatgcttccaactgttcctgaatcttttacagtcattctgtagcatgtatctgtgt 623

                                                                       
Query: 424 gtttgtatatataaacatatatgtatctgtctaggcacatatatatatatatatatatat 483
           |||||||||||||||||||||||||||||||||||||||||||||||| | | |      
Sbjct: 624 gtttgtatatataaacatatatgtatctgtctaggcacatatatatatgtgtgt------ 677

                                                                       
Query: 484 gtgtgtgtgtgtatgcatatatatgtgtgtgtg--tgtgtatgtctgtgtctatatacat 541
           |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||
Sbjct: 678 gtgtgtgtgtgtatgcatatatatatgtgtgtgcgtgtgtatgtctgtgtctatatacat 737

                              
Query: 542 atagacatatgtagataca 560
           |||||||||||||||||||
Sbjct: 738 atagacatatgtagataca 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)