BAC Information

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BAC

Clone NameMSMg01-297L05
Chromosome14 (Build37)
Map Location 33,382,890 - 33,561,239
singlet/doubletdoublet
Overlap geneErcc6, 9430077A04Rik, Prrxl1, 3425401B19Rik
Upstream geneColq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618
Downstream gene1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297L05.T7 (MSMg01no297_l05.b1)MSMg01-297L05.TJ (MSMg01no297_l05.g1)
ACCAG424953AG424954
length735735
length of high quality
(start - end)
346 (76 - 421)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no297_l05.b1 PHD_FILE: MSMg01no297_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:12 2005CHROMAT_FILE: MSMg01no297_l05.g1 PHD_FILE: MSMg01no297_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,560,894 - 33,561,239)(33,382,890 - 33,383,138)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGATACGCGG
AATTCTTGTCAGTTTTTCGTCAAGCTACAAAAGATAGAAGTAAAGAGTTG
ACAGGAAAAAGAAACATGAAAAAAATTGAAGCCTGATTAAAACAAGTCAA
GTATACAGAAAACCTGGAGAAACTGGATGTGGAGTGTTCGCAATGATTCT
TATACTAGCTGACATCATGATTATAACTAAATCCAAACTGCAACACAACT
TCAAGAACAGGAACGGAAAGAAAACACAATTTTAGCTGATTGATCCGTTG
ACATATGACTCGACAGGTTATTATCTACTAATGTCACTGTTTACTTGGAT
GCTTAATCATTTCAGACTATGACATCAGTGAGACAAATAAAATTACATAA
TTCTAGTGCCCCTAAAAATCAACACACAAAATACCCAAAATTAAATGACT
TGATAAGACAACAAAATAAATGTATTAGGGATAACAAAGCTACATGTGTT
ATGACTAGAGAAGAGAAAGCTACAGATAAGAAAGAGGAAGGTAGTTGGAA
CTTGATTCAAGATGGTGGCCATTCTGAGGTGCCTGCAAGACCCACAGAGG
CTTCGAGCGGGAGGATGACCCTGAAGAGCATGCAAAGTATCCCAAACAAT
GGGAACAAATGGGAAGAAGATGCTTTTAAAAAGAGGTTTTATGAAATTGG
ACAAAAAAAAAGAAAAGATGGTGCAACAGGACCTN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCAGAGTATCATTAGCTGTGTTCTC
CCTGTTACAGGAACGGGCTCCAGTATTCAGACACCCAAATGCCATTTAAA
AAAAAGGACTTCCACAGTCCTGGGAACAGATCCCAAATGCAAGAAGCCCC
CTGTTTCTGACACACCTGCAAATGCTGCCACCCTGATTGGAGAAAAACCT
AAGGCGGCGGGAGCTACAGGAAGAAGTGTCACTTCTGGAGAAAGTGGTGC
TTTCAAAGGCGACCCTGACACAAATGTTTAACAGAGCTAGCAGTGTTGCT
TTTGGAGAAGAGACAGATGCAGGGTCCACACTGGAGCATCTCTCAGTGAT
GAGTGGAGATGGCAAGCATTCACACCCTCCAGTACTTGACCACACATCCA
GGCCACCAGTGTAGGCGAGCACCAGTGAGAAGCAGGGTTCTTCCTATGCA
GGGGCGTGCTGCCAGGCTCATACAGAACCTGTTCCCATGAGTGAACAAAC
GGAAGGCCAGTTTTCTAAGTACAAATCCAAAAGGAAGCATGATGCATCTG
ATGAAGAGACCACAGAGAAACGTCCACAGCCCAAGCAAAAGGCCAAGAAC
CTCCAAGCATTGCAGAGATGCTAAGTTTGAGGAAACGCGAGTCCCCGCAC
CTGGTGAAGAAAAGACGGTACCGCCTGCTAACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_l05.b1 MSMg01no297_l05.b1 CHROMAT_FILE:
MSMg01no297_l05.b1 PHD_FILE: MSMg01no297_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:12 2005
         (346 letters)



>mm_chr14_33560694_33561439
          Length = 746

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaaaagatagaagtaaagagttgacaggaaaaagaaacatgaaaaaaattgaagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tacaaaagatagaagtaaagagttgacaggaaaaagaaacatgaaaaaaattgaagcctg 487

                                                                       
Query: 61  attaaaacaagtcaagtatacagaaaacctggagaaactggatgtggagtgttcgcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attaaaacaagtcaagtatacagaaaacctggagaaactggatgtggagtgttcgcaatg 427

                                                                       
Query: 121 attcttatactagctgacatcatgattataactaaatccaaactgcaacacaacttcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attcttatactagctgacatcatgattataactaaatccaaactgcaacacaacttcaag 367

                                                                       
Query: 181 aacaggaacggaaagaaaacacaattttagctgattgatccgttgacatatgactcgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aacaggaacggaaagaaaacacaattttagctgattgatccgttgacatatgactcgaca 307

                                                                       
Query: 241 ggttattatctactaatgtcactgtttacttggatgcttaatcatttcagactatgacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggttattatctactaatgtcactgtttacttggatgcttaatcatttcagactatgacat 247

                                                         
Query: 301 cagtgagacaaataaaattacataattctagtgcccctaaaaatca 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagtgagacaaataaaattacataattctagtgcccctaaaaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no297_l05.g1 MSMg01no297_l05.g1 CHROMAT_FILE:
MSMg01no297_l05.g1 PHD_FILE: MSMg01no297_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:12 2005
         (249 letters)



>mm_chr14_33382690_33383338
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagagtatcattagctgtgttctccctgttacaggaacgggctccagtattcagacacc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gcagagtatcattagctgtgttctccctattacaggaacgggctccagtattcagacacc 260

                                                                       
Query: 61  caaatgccatttaaaaaaaaggacttccacagtcctgggaacagatcccaaatgcaagaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatgccagttaaaaaaaaggacttccacagtcctgggaacagatcccaaatgcaagaa 320

                                                                       
Query: 121 gccccctgtttctgacacacctgcaaatgctgccaccctgattggagaaaaacctaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccctgtttctgacacacctgcaaatgctgccaccctgattggagaaaaacctaaggc 380

                                                                       
Query: 181 ggcgggagctacaggaagaagtgtcacttctggagaaagtggtgctttcaaaggcgaccc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 381 ggcgggagctacaggaagaagtgtcacttctggagaaagtggtcctttcaaaggcgacca 440

                    
Query: 241 tgacacaaa 249
           |||||||||
Sbjct: 441 tgacacaaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)