BAC Information

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BAC

Clone NameMSMg01-298D20
Chromosome14 (Build37)
Map Location 33,698,673 - 33,699,331
singlet/doubletsinglet
Overlap geneE130203B14Rik
Upstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik
Downstream geneEG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298D20.T7 (MSMg01no298_d20.b1)MSMg01-298D20.TJ (MSMg01no298_d20.g1)
ACCAG425348AG425349
length745739
length of high quality
(start - end)
253 (70 - 322)659 (73 - 731)
definitionCHROMAT_FILE: MSMg01no298_d20.b1 PHD_FILE: MSMg01no298_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:53 2005CHROMAT_FILE: MSMg01no298_d20.g1 PHD_FILE: MSMg01no298_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCACCGTATGATTACTGCTCTTACTGAGGACTTTCTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTAATTTCCTTTTCTTTCCATTTTTTATTAGGT
ATTTAGCTCATTTACATTTCCAAGGCTATACCAAAAGTCCCCCATACCCA
CCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTT
CCCCTGTTCTGGGGCATATAAAGTTTGGGGGTCCAATGGGCCTCTCTTTC
CAGGGATGGCCGACTAGGCCATCTTTTTATACATATGCAGCTAGAGTCAA
GAGCTCCGGGGTACTGTTTATCCCCCCCCGCCCCCCCTGAGGACTTTCAT
TGTTGGCGACTTATTCCCCCCCCCCACGACAGAAAAGAAGAAATTCCAAC
CTGATTATTACCCATTATATACTTGGACCAAAATGCACTGCACCCCATTA
ATGTGGGGGAATTTCTGTGGGCCAATTTAAAACAAGCTTAAAACAAAAAG
GCTCACTGCCTCGACACAACAATAATATGACTTTCCAATCCTATGCGGGA
GGCCGCCTATCTCCCCCCCCACTTGATAACAGATCACCCGATACTTGCCA
TTAAAAGCCTAAATGCAAAAAAGGGCCCTTCCCTGCCCCTCCCGACTTCA
ACCACTGTACCCATAGCCCTCCCACTCCTCCCCAAAATTTTACTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCTAGCCCGATCTGCACAGCTAGTT
CTAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCAAAAAGCAAAATA
TTGAATTGAATTAAATTTTAGTAATTTAGATTTAAATTGCCAATTGTGAT
CTGTGGCTACCAACTGAAGAGCTCTAGACAAGAAAATCAAGGACTTGACT
TTTAGAAAGGCAGGTCAAATGCAGAAGGCATCGGCACAAGAGACAAGCAA
TGAGACAGAGACAGGCTGCCTGTTCATTTCGTGTTATTGTGACTCCTATA
TGTGTCTGAATTATTGTTGCTATAGATATCAATTCTTAACTTGCTACCCT
TTTGTCTTTGGGACCATTATTGGATATTTAGTTTTGAAGTGTCTTCCAGA
CAGCTGATCTTCTCTTTCTGTGTGTCCACCCTATTTTTTCTTTTCATTTA
TGGCATTTTTCAGCTCAGGATTATTTGTCCAATTCTTCTTCATACACCCC
AGTTCTCCAATGGATCCTCCAGTTTCTCATCTAACGTCCTAACCAAGCTA
GCGATCAAAGCTAACAGCCGTGCCTGACAACTTCCATAGCAAGTATGACC
CACAGACGTGTTCTTCCCATCTGGTTTTGATTTTGACATTGTCTCAGTAT
GCCTGAGAATTTTTCCAGAGGGAACGTCAGACGTGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_d20.g1 MSMg01no298_d20.g1 CHROMAT_FILE:
MSMg01no298_d20.g1 PHD_FILE: MSMg01no298_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:53 2005
         (659 letters)



>mm_chr14_33698323_33699381
          Length = 1059

 Score = 1251 bits (647), Expect = 0.0
 Identities = 656/659 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaggctagcccgatctgcacagctagttctaggacagccagggttacacagagaaaccct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 aaggctagcccgatctgcacagctagttctaggacagccagggttacacagagaaaccct 950

                                                                        
Query: 61   gtctcaaaaagcaaaatattgaattgaattaaattttagtaatttagatttaaattgcca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  gtctcaaaaagcaaaatattgaattgaattaaattttagtaatttagatttaaattgcca 890

                                                                        
Query: 121  attgtgatctgtggctaccaactgaagagctctagacaagaaaatcaaggacttgacttt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  attgtgatctgtggctaccaactgaagagctctagacaagaaaatcaaggacttgacttt 830

                                                                        
Query: 181  tagaaaggcaggtcaaatgcagaaggcatcggcacaagagacaagcaatgagacagagac 240
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 829  tagaaaggcaggtcaaatgcagaaggcatcggcacaagagacgagcaatgagacagagac 770

                                                                        
Query: 241  aggctgcctgttcatttcgtgttattgtgactcctatatgtgtctgaattattgttgcta 300
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 769  aggctgcctgttcatttcgtgttattgtgactcctatatgcgtctgaattattgttgcta 710

                                                                        
Query: 301  tagatatcaattcttaacttgctacccttttgtctttgggaccattattggatatttagt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  tagatatcaattcttaacttgctacccttttgtctttgggaccattattggatatttagt 650

                                                                        
Query: 361  tttgaagtgtcttccagacagctgatcttctctttctgtgtgtccaccctattttttctt 420
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  tttaaagtgtcttccagacagctgatcttctctttctgtgtgtccaccctattttttctt 590

                                                                        
Query: 421  ttcatttatggcatttttcagctcaggattatttgtccaattcttcttcatacaccccag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  ttcatttatggcatttttcagctcaggattatttgtccaattcttcttcatacaccccag 530

                                                                        
Query: 481  ttctccaatggatcctccagtttctcatctaacgtcctaaccaagctagcgatcaaagct 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  ttctccaatggatcctccagtttctcatctaacgtcctaaccaagctagcgatcaaagct 470

                                                                        
Query: 541  aacagccgtgcctgacaacttccatagcaagtatgacccacagacgtgttcttcccatct 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  aacagccgtgcctgacaacttccatagcaagtatgacccacagacgtgttcttcccatct 410

                                                                       
Query: 601  ggttttgattttgacattgtctcagtatgcctgagaatttttccagagggaacgtcaga 659
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409  ggttttgattttgacattgtctcagtatgcctgagaatttttccagagggaacgtcaga 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)