BAC Information

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BAC

Clone NameMSMg01-298G13
Chromosome14 (Build37)
Map Location 93,725,245 - 93,879,237
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298G13.T7 (MSMg01no298_g13.b1)MSMg01-298G13.TJ (MSMg01no298_g13.g1)
ACCAG425468AG425469
length742744
length of high quality
(start - end)
671 (45 - 715)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no298_g13.b1 PHD_FILE: MSMg01no298_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005CHROMAT_FILE: MSMg01no298_g13.g1 PHD_FILE: MSMg01no298_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,878,571 - 93,879,237)(93,725,245 - 93,725,886)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAGACCGCGG
AATTCTCTCATTTCGTTGGCATGTCATTTTTTGATATTATTTTATCTGTT
TTGGCACTTTGGATGCTTCAGTATAATTGCCTTGATAAATAGAACTGAGC
TGCTGGTAGCTTCCTTGTCTCTTCCTCCACTTTTCTGCTGATATTTTGAA
GCATTGTCTTCTTATAATAACATTTATTATTTTAGAACAGAATTTTTTAA
AGCAGAGCTGGGGCCTATTTAAGAAGAGTTTGTTACAGGTTTTGAGCACA
AGGGTTCAAATCAGATTTTATAGGAAAAAAATAAGACATAGAGCATGGGT
TTGGACATCTTAGATGGGTCAACCTGATTTTATTTAAATAATTTCTTAGA
TTTCAGGCTGGTTTTGCAACACCATTTTGAGATATTGTATGTGGTAAAGT
ACTTACCTTGCTGTCTTTCTAAGAACAATTAAAGGATAATTTGTAATGTG
GGAGATCCCAGGGAACAGAATTCTCTATTCTTTTCAAGTGGAAAGGGGGA
AGATTGCCAGCACTATAAATGAAACTACCAGATAATTTTCCCATTAATCA
TTCACAAGTATCTATATTTCAGAGTTTATATGGCAATTAAGAGATAACCT
TCCTACTGGTCCTTTCCACTACAAAGTCCATGATCATGACCTCTTTTTGT
ATTTATTTAAATGTCAAAATAAGATTTTGCTTTAATTCATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAATCTGTACTGCTTTAAAGGGAATATTTG
AGGCTAACAATTTCCAAGGTTGGATGTGGCTCTTTGGATGATGTAGGGTG
TAGGCCAGATACGTTCCTTTCAACCTACTTATGCAAAACTCAATTATTCA
AAACATAAAACATGAATAAAAATTTATGAAAGAATTATCTCCTTTTTTTC
TCAGACAGATTCACATCACATTCAATAGTCTTTATTCTGTGTAAAGAGTT
CTTTAGACGATAGCACGCCAATTGTCTTAGACAAATATATGTATGCACAG
ACACACAAAAACATATTTCTATTTCTATTAGATATCATCCACAATATTCT
AATAAACTGTATTTTATCAATCTTAACTGCTTATTCTGTAACCCTTTTGA
CACCAGATTATACTTCAACAAAAATATTCTTTCAGTTATATATATCTGAA
CATTTGAAAATCACTTTAATGGCTCATAAACTAAAAAGAATATCACACCA
TTTCAAAGGTCAACATAGCAAATGCATCACACTACATTTACATCAAGAGG
TATAGCATTAATTATAGCAGGTACAGCCCATTGTCCGTCACTGGCACAAC
AGGGTGACTGACCATGTAAACAAGTTTCAGCACACAGCTCAACCGGACCA
GCTAAGAAGACAGGAAGAAGACTCACCAGAATTGGGATCCGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_g13.b1 MSMg01no298_g13.b1 CHROMAT_FILE:
MSMg01no298_g13.b1 PHD_FILE: MSMg01no298_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:05 2005
         (671 letters)



>mm_chr14_93878351_93879421
          Length = 1071

 Score = 1259 bits (651), Expect = 0.0
 Identities = 663/669 (99%), Gaps = 5/669 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctcatttc---gttggcatgtcattttttgatattattttatctgttttggca 62
           |||||||||||  ||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattctctca--tcaatgttggcatgtcattttttgatattattttatctgttttggca 830

                                                                       
Query: 63  ctttggatgcttcagtataattgccttgataaatagaactgagctgctggtagcttcctt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ctttggatgcttcagtataattgccttgataaatagaactgagctgctggtagcttcctt 770

                                                                       
Query: 123 gtctcttcctccacttttctgctgatattttgaagcattgtcttcttataataacattta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtctcttcctccacttttctgctgatattttgaagcattgtcttcttataataacattta 710

                                                                       
Query: 183 ttattttagaacagaattttttaaagcagagctggggcctatttaagaagagtttgttac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttattttagaacagaattttttaaagcagagctggggcctatttaagaagagtttgttac 650

                                                                       
Query: 243 aggttttgagcacaagggttcaaatcagattttataggaaaaaaataagacatagagcat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aggttttgagcacaagggttcaaatcagattttataggaaaaaaataagacatagagcat 590

                                                                       
Query: 303 gggtttggacatcttagatgggtcaacctgattttatttaaataatttcttagatttcag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gggtttggacatcttagatgggtcaacctgattttatttaaataatttcttagatttcag 530

                                                                       
Query: 363 gctggttttgcaacaccattttgagatattgtatgtggtaaagtacttaccttgctgtct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gctggttttgcaacaccattttgagatattgtatgtggtaaagtacttaccttgctgtct 470

                                                                       
Query: 423 ttctaagaacaattaaaggataatttgtaatgtgggagatcccagggaacagaattctct 482
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttctaagaacaattaaaagataatttgtaatgtgggagatcccagggaacagaattctct 410

                                                                       
Query: 483 attcttttcaagtggaaagggggaagattgccagcactataaatgaaactaccagataat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 attcttttcaagtggaaagggggaagattgccagcactataaatgaaactaccagataat 350

                                                                       
Query: 543 tttcccattaatcattcacaagtatctatatttcagagtttatatggcaattaagagata 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttcccattaatcattcacaagtatctatatttcagagtttatatggcaattaagagata 290

                                                                       
Query: 603 accttcctactggtcctttccactacaaagtccatgatcatgacctctttttgtatttat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 accttcctactggtcctttccactacaaagtccatgatcatgacctctttttgtatttat 230

                    
Query: 663 ttaaatgtc 671
           |||||||||
Sbjct: 229 ttaaatgtc 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_g13.g1 MSMg01no298_g13.g1 CHROMAT_FILE:
MSMg01no298_g13.g1 PHD_FILE: MSMg01no298_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:05 2005
         (642 letters)



>mm_chr14_93725045_93726086
          Length = 1042

 Score = 1210 bits (626), Expect = 0.0
 Identities = 638/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtactgctttaaagggaatatttgaggctaacaatttccaaggttggatgtggctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtactgctttaaagggaatatttgaggctaacaatttccaaggttggatgtggctct 260

                                                                       
Query: 61  ttggatgatgtagggtgtaggccagatacgttcctttcaacctacttatgcaaaactcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggatgatgtagggtgtaggccagatacgttcctttcaacctacttatgcaaaactcaa 320

                                                                       
Query: 121 ttattcaaaacataaaacatgaataaaaatttatgaaagaattatctcctttttttctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattcaaaacataaaacatgaataaaaatttatgaaagaattatctcctttttttctca 380

                                                                       
Query: 181 gacagattcacatcacattcaatagtctttattctgtgtaaagagttctttagacgatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagattcacatcacattcaatagtctttattctgtgtaaagagttctttagacgatag 440

                                                                       
Query: 241 cacgccaattgtcttagacaaatatatgtatgcacagacacacaaaaacatatttctatt 300
           ||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacgccaaagggcatagacaaatatatgtatgcacagacacacaaaaacatatttctatt 500

                                                                       
Query: 301 tctattagatatcatccacaatattctaataaactgtattttatcaatcttaactgctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctattagatatcatccacaatattctaataaactgtattttatcaatcttaactgctta 560

                                                                       
Query: 361 ttctgtaacccttttgacaccagattatacttcaacaaaaatattctttcagttatatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtaacccttttgacaccagattatacttcaacaaaaatattctttcagttatatat 620

                                                                       
Query: 421 atctgaacatttgaaaatcactttaatggctcataaactaaaaagaatatcacaccattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctgaacatttgaaaatcactttaatggctcataaactaaaaagaatatcacaccattt 680

                                                                       
Query: 481 caaaggtcaacatagcaaatgcatcacactacatttacatcaagaggtatagcattaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaaggtcaacatagcaaatgcatcacactacatttacatcaagaggtatagcattaatt 740

                                                                       
Query: 541 atagcaggtacagcccattgtccgtcactggcacaacagggtgactgaccatgtaaacaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atagcaggtacagcccattgtccgtcactggcacaacagggtgactgaccatgtaaacaa 800

                                                     
Query: 601 gtttcagcacacagctcaaccggaccagctaagaagacagga 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtttcagcacacagctcaaccggaccagctaagaagacagga 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)