BAC Information

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BAC

Clone NameMSMg01-298L05
Chromosome14 (Build37)
Map Location 33,382,889 - 33,561,245
singlet/doubletdoublet
Overlap geneErcc6, 9430077A04Rik, Prrxl1, 3425401B19Rik
Upstream geneColq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618
Downstream gene1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298L05.T7 (MSMg01no298_l05.b1)MSMg01-298L05.TJ (MSMg01no298_l05.g1)
ACCAG425682AG425683
length735726
length of high quality
(start - end)
454 (59 - 512)376 (58 - 433)
definitionCHROMAT_FILE: MSMg01no298_l05.b1 PHD_FILE: MSMg01no298_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:26 2005CHROMAT_FILE: MSMg01no298_l05.g1 PHD_FILE: MSMg01no298_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,560,792 - 33,561,245)(33,382,889 - 33,383,264)
sequence
GCGGCCGCTAAACGACTNCACTATTCAAGAGGAGCCGCGGAATTCTTGTC
TTTCCTCGTCAGGCTACAAAAGATAGAAGTAAAGAGTTGACAGGAAAAAG
AAACATGAAAAAAATTGAAGCCTGATTAAAACAAGTCAAGTATACAGAAA
ACCTGGAGAAACTGGATGTGGAGTGTTCGCAATGATTCTTATACTAGCTG
ACATCATGATTATAACTAAATCCAAACTGCAACACAACTTCAAGAACAGG
AACGGAAAGAAAACACAATTTTAGCTGATTGATCCGTTGACATATGACTC
GACAGGTTATTATCTACTAATGTCACTGTTTACTTGGATGCTTAATCATT
TCAGACTATGACATCAGTGAGACAAATAAAATTACATAATTCTAGTGCCC
CTAAAAATCAAGACAGAAAATACCCAAAATTAAATGACTTGATAAGACAA
CAAAATAAATGTATTAGGGATAACAAAGCTACATGTGTTATGACTAGAGA
AGAGAAAGCTACAGATAAGAAAGAGGAAGGTAGTTGGAACTTGATTCACG
ATGGTGGCCATTCTGAGGTGCCTGCCAGACCCACACAGGCTTCTAGCGTG
AGGATGACCCTTGACAGCCTGCAAAGCATCCCTTACTATGGTAACAAATG
GGAAGAAGATGCTCTTCAACATGAGGTCTCATGAAATTGGCAATAATATA
AGTAAAGACGGTGCAACCGGACGTTGTGCCCAGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCAGAGTATCATTAGCTGTGTTCTCCCTGTTACAGGAACGGG
CTCCACTATTCAGACACCCAAATGCCATTTAAAAAAAAGGACTTCCACAG
TCCTGGGAACAGATCCCAAATGCAAGAAGCCCCCTGTTTCTGACACACCT
GCAAATGCTGCCACCCTGATTGGAGAAAAACCTAAGGCGGCGGGAGCTAC
AGGAAGAAGTGTCACTTCTGGAGAAAGTGGTGCTTTCAAAGGCGACCCTG
ATACTTTTGGGAACAGAGCTAGCAGTGTTGCTTTTGGAGAAGAGACAGAT
GCAGGGTCCACACTGGAGCATCTCTCAGTGATGAGTGGAGATGGCAAGCA
TTCAGATTCTCCAGCACTTGACCACACATCCAGGCCACCAGTGGAGGCGA
GCACCAGTGAGAAGCAGGGTTCTTCCTATGCAGGGGCGTGCTGCCAGGCT
CAGACAGAACCTGTTCCCATGACTGAACAAACGGAAGGTCAGTTTTCTAA
TTACAAATCCAAAAGGAAGCATGATGCATCTGAGGAAGATACCACAGAGA
AACGTCCACAGTCCAAGCAAAAGGCCAAGAACTCCAAGCATTGCAGAGAT
GCTTAGTTTGACGCAACGCGAGTCCCGCACCTGGTGAACAAAACACGTTA
CCGCCAGCACACCAGTGATCACGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_l05.b1 MSMg01no298_l05.b1 CHROMAT_FILE:
MSMg01no298_l05.b1 PHD_FILE: MSMg01no298_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:26 2005
         (454 letters)



>mm_chr14_33560592_33561445
          Length = 854

 Score =  878 bits (454), Expect = 0.0
 Identities = 454/454 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggctacaaaagatagaagtaaagagttgacaggaaaaagaaacatgaaaaaaattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tcaggctacaaaagatagaagtaaagagttgacaggaaaaagaaacatgaaaaaaattga 595

                                                                       
Query: 61  agcctgattaaaacaagtcaagtatacagaaaacctggagaaactggatgtggagtgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agcctgattaaaacaagtcaagtatacagaaaacctggagaaactggatgtggagtgttc 535

                                                                       
Query: 121 gcaatgattcttatactagctgacatcatgattataactaaatccaaactgcaacacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcaatgattcttatactagctgacatcatgattataactaaatccaaactgcaacacaac 475

                                                                       
Query: 181 ttcaagaacaggaacggaaagaaaacacaattttagctgattgatccgttgacatatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttcaagaacaggaacggaaagaaaacacaattttagctgattgatccgttgacatatgac 415

                                                                       
Query: 241 tcgacaggttattatctactaatgtcactgtttacttggatgcttaatcatttcagacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcgacaggttattatctactaatgtcactgtttacttggatgcttaatcatttcagacta 355

                                                                       
Query: 301 tgacatcagtgagacaaataaaattacataattctagtgcccctaaaaatcaagacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgacatcagtgagacaaataaaattacataattctagtgcccctaaaaatcaagacagaa 295

                                                                       
Query: 361 aatacccaaaattaaatgacttgataagacaacaaaataaatgtattagggataacaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aatacccaaaattaaatgacttgataagacaacaaaataaatgtattagggataacaaag 235

                                             
Query: 421 ctacatgtgttatgactagagaagagaaagctac 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ctacatgtgttatgactagagaagagaaagctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_l05.g1 MSMg01no298_l05.g1 CHROMAT_FILE:
MSMg01no298_l05.g1 PHD_FILE: MSMg01no298_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:27 2005
         (376 letters)



>mm_chr14_33382689_33383464
          Length = 776

 Score =  634 bits (328), Expect = 0.0
 Identities = 364/376 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagagtatcattagctgtgttctccctgttacaggaacgggctccactattcagacac 60
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 201 tgcagagtatcattagctgtgttctccctattacaggaacgggctccagtattcagacac 260

                                                                       
Query: 61  ccaaatgccatttaaaaaaaaggacttccacagtcctgggaacagatcccaaatgcaaga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatgccagttaaaaaaaaggacttccacagtcctgggaacagatcccaaatgcaaga 320

                                                                       
Query: 121 agccccctgtttctgacacacctgcaaatgctgccaccctgattggagaaaaacctaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccccctgtttctgacacacctgcaaatgctgccaccctgattggagaaaaacctaagg 380

                                                                       
Query: 181 cggcgggagctacaggaagaagtgtcacttctggagaaagtggtgctttcaaaggcgacc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cggcgggagctacaggaagaagtgtcacttctggagaaagtggtcctttcaaaggcgacc 440

                                                                       
Query: 241 ctgatacttttgggaacagagctagcagtgttgcttttggagaagagacagatgcagggt 300
            ||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgacacaaatgggaacagagctagcagtgttgcttttggagaagagacagatgcagggt 500

                                                                       
Query: 301 ccacactggagcatctctcagtgatgagtggagatggcaagcattcagattctccagcac 360
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || 
Sbjct: 501 ccacactggagcatctctcagtgatgagtggagatgggaagcattcagattctccaacag 560

                           
Query: 361 ttgaccacacatccag 376
           ||||||||||||||||
Sbjct: 561 ttgaccacacatccag 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)