BAC Information

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BAC

Clone NameMSMg01-298P14
Chromosome14 (Build37)
Map Location 58,315,201 - 58,315,376
singlet/doubletsinglet
Overlap geneLats2
Upstream gene4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4
Downstream geneSap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298P14.T7 (MSMg01no298_p14.b1)MSMg01-298P14.TJ (MSMg01no298_p14.g1)
ACCAG425876AG425877
length853749
length of high quality
(start - end)
179 (75 - 253)457 (72 - 528)
definitionCHROMAT_FILE: MSMg01no298_p14.b1 PHD_FILE: MSMg01no298_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:46 2005CHROMAT_FILE: MSMg01no298_p14.g1 PHD_FILE: MSMg01no298_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGCGCGCGG
AATTCAACACTGTTTGCGAAGCACATAGCTTCAAACAGAAACATGATTCT
GGCCAATTCCTGTCAGCACACATTCCCCTCCACTGACGACCCCAGGCCCC
TCTCCATGGCGGTCAGGTATCGTTTACTGAGCAACGACTCCAGGAACTCT
GAGATTTATTTTTCAAAGTTTCTTTTTTTTTTGGGGGGGGGGGGTTGAGA
CCGGTTTTTTTTCGTACCCTTGTCCGTCCCGAACTTCAAATATCTTCTTG
CTCCCGACACCCGAATGCCAGTTTTTTTTTCGCTGTTACCCCGCTCCTCG
TTACAACATTCCGCTTTTTTCTTTACCTCCCCTCCTCCTCTATTTTAACT
TACATATCGTTGTTTTCCTTCGTCCCCCCCCCGTTATAAAAAAAATATTT
TTCCCCTTTCCTTTCTTGACTTATCATTAATCCTTCACCTTTTTTTTATA
TCAATACCTTTCCCCCCCTCCTCTTCACACACCTTCCCTCTTTTATTATA
TCGCCACCCATTAAGTTTCACCCTTTCTATTCTCTCCTCTATAATTCTCC
TTTTCCATAATTCCCCCCCAATGTATTTTTTATACTTCTCCCTCCCTTTT
AAATACTCTCTTTGATAATCTCTACCTCCATTTTTCTCCTTCCTCCTTTA
TCATTATTCCCCATTATTCAGATACGCATCCCATCTATATCTTCCTTTTA
TTGTCTCTTACATCCTCCCCTTTAACATTTACCCCACCAATCACTTATTC
TCTACCTGATTCCCTATATCCTCCCCTCATACCCTTCCCTATCAAGTTTC
CTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCAGAAATTCCATAGACAGGTTTTTTTGTTTGTTTGTT
TTTGTTTTTTTCGAGACAGGGCTTCCCTGTGTAGCCCTGGCTGTCCTGGA
ACTCACTCTGTAGACCAGGCTGGCCCGGAACTCAGAAATCCACCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACGCCCGACCCAT
GGACAGATCTTTTGAGCTAGAGTTGTAAGTAGTTGTGGACCATTGAGGTA
GGTGCTGAGAACCTCTGGATTTTCAGCCAGAACTCTTTTTTTTTTTTTTT
CTTTTTTAAGATTTATTTATCCATATGAGTACACACCATTGCTCTCTCGA
CACACCAGAAGAGGCCACCAGATCCATTACAGATGATTGTGAGCCACCAT
GTGGCTGCTGGGAATTGTACTCAAAACCTCTAGAAGAGCACAGTCAGAGC
CCCCCCCCCTTTTTTTTTCTTAAAAAGAAGTCATCTCTCCAGCCTGTTGT
ATTTACCTTCAACCCCGCCCCCTTTTTGAGATAGGGTCTCTCTCCTTGTA
CTCCTGGCTATCCTATTATGTAGACCAGGATACATTCCAAAGCGCCTCAG
ACTCACATATTGTGTCCTGCCTCCGCCTCCTAAGTGCTGGTCTTAAAGAA
TGTGGTACCCAACCTAGCCCATTAATTAATTTTTACATTACTTACGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_p14.b1 MSMg01no298_p14.b1 CHROMAT_FILE:
MSMg01no298_p14.b1 PHD_FILE: MSMg01no298_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:46 2005
         (179 letters)



>mm_chr14_58315001_58315578
          Length = 578

 Score =  313 bits (162), Expect = 3e-90
 Identities = 174/178 (97%), Gaps = 3/178 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcttcaaacagaaacatgattctggccaattcctgtcagcacacattcccctccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcttcaaacagaaacatgattctggccaattcctgtcagcacacattcccctccact 260

                                                                       
Query: 61  gacgaccccaggcccctctccatggcggtcaggtatcgtttactgagcaacgactccagg 120
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gacgaccccagg-ccctctccatggcggtcaagtatcgtttactgagcaacgactccagg 319

                                                                     
Query: 121 aactctgagatttatttttcaaagtttcttttttttttggggggggggggtt-gagac 177
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 320 aactctgagatttatttttcaaagtttcttttttttt-ggggggggggggttcgagac 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 578
Length adjustment: 8
Effective length of query: 171
Effective length of database: 570
Effective search space:    97470
Effective search space used:    97470
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)