Query= MSMg01no299_i02.b1 MSMg01no299_i02.b1 CHROMAT_FILE:
MSMg01no299_i02.b1 PHD_FILE: MSMg01no299_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:27 2005
(580 letters)
>mm_chr14_113368984_113369963
Length = 980
Score = 1035 bits (535), Expect = 0.0
Identities = 568/583 (97%), Gaps = 7/583 (1%)
Strand = Plus / Minus
Query: 5 gaattccacaatttattacgaagtgcactgtctgataaggattcattttttgggtttgta 64
||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 897 gaattccacaatttaggaggaagtgcactgtctgataaggattcactttttgggtttgta 838
Query: 65 tatcgcacctacccaacacattctctggtaaataaaggcatacaagatcc-------ccc 117
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 837 tatcgcacctacccaacacattctctggtaaataaaggcatacaagatcccccccctccc 778
Query: 118 cagttacattttccttaagagactaattacaaagaggaatgctccaaattcaaagacttc 177
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 777 cagttatattttccttaagagactaattacaaggaggaatgctccaaattcaaagacttc 718
Query: 178 acctgagtgtctccttctttgggcttgattttcaacaaacaaatttagagaacagggcag 237
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 717 acctgagtgtctccttctttgggcttgagtttcaacaaacaaatttagagaacagggcag 658
Query: 238 ctgaatccttcagagaacattagaaaatgtaaggctgcataattgcaccgtgtttctaag 297
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 657 ctgaatccttcagagaacattagaaaatgtaaggctgcataattgcactgtgtttctaag 598
Query: 298 aacagttcagcaagagtgccacttcaaatcagaattgtccgcagaaatatataggttttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aacagttcagcaagagtgccacttcaaatcagaattgtccgcagaaatatataggttttt 538
Query: 358 tttttcagataatagaaacaatcaagtgcacttcacatttctgaaatatctcatttcaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttttcagataatagaaacaatcaagtgcacttcacatttctgaaatatctcatttcaat 478
Query: 418 tttgaagtgaattttgccttggttttccaaacatatttacccaagaaagatggtttacat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttgaagtgaattttgccttggttttccaaacatatttacccaagaaagatggtttacat 418
Query: 478 ggagaactgctaatgatcctaaatgcttaatacatttatcaatgaaccacttacctttct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggagaactgctaatgatcctaaatgcttaatacatttatcaatgaaccacttacctttct 358
Query: 538 acatttttatagatgtaggaaataaatgttaatttccctgttg 580
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acatttttatagatgtaggaaataaatgttaatttccctgttg 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_i02.g1 MSMg01no299_i02.g1 CHROMAT_FILE:
MSMg01no299_i02.g1 PHD_FILE: MSMg01no299_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:27 2005
(536 letters)
>mm_chr14_113204330_113205265
Length = 936
Score = 944 bits (488), Expect = 0.0
Identities = 524/536 (97%), Gaps = 1/536 (0%)
Strand = Plus / Plus
Query: 2 gttttgatccatgcccattctttagttgagttatttgggtgtatcttgtctaacttcttg 61
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttgctccataccctttctttagttgagttatttgggtgtatcttgtctaacttcttg 260
Query: 62 atttctttctattttggatattagccctctttcagatgtatagttgatgaaaatctttac 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 atttctttctattttggatattagccctctgtcagatgtatagttgatgaaaatctttac 320
Query: 122 caaatctctaggctgttattcatcttattgatggtggcctttgattgacagacgtttttg 181
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 caaatctctaggctgttattcatcttattgatggtggcctttgattgacagaagtttttg 380
Query: 182 ga-ttcatgaggtcctacttattaagcgctgatattagagactgagccattggtgttgca 240
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gatttcatgaggtcctacttattaagcgctaatattagagactgagccattggtgttgca 440
Query: 241 agcaggatcccctttcacatccttgcatatcccttcacatccactcaaagacaagaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaggatcccctttcacatccttgcatatcccttcacatccactcaaagacaagaacca 500
Query: 301 cagaaatctcttctccagtacaacagatgcaatcttcattccaagccccagagactcctt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 cagaaatctcttctccagtacaacagatgcaatcttcattccaagccccagaaactcctt 560
Query: 361 atagactaactacaacttcctccttacagttgctttactggatagttttatatcaactta 420
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 561 atagactaactacaacttcctccttacagttgttttactggatagttttatgtcaactta 620
Query: 421 ccccaagctagaattaactgaaagggcaattcagaaatgactccataacagtcagcttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ccccaagctagaattaactgaaagggcaattcagaaatgactccataacagccagcttta 680
Query: 481 gatcattttcttaattagagatcaatgtaggggggtcagtgcccattgttagtggg 536
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gatcattttcttaattagagatcaatgtaggagggtcagtgcccattgttagtggg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
