BAC Information

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BAC

Clone NameMSMg01-299J05
Chromosome14 (Build37)
Map Location 80,555,586 - 80,555,864
singlet/doubletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299J05.T7 (MSMg01no299_j05.b1)MSMg01-299J05.TJ (MSMg01no299_j05.g1)
ACCAG426309AG426310
length780749
length of high quality
(start - end)
283 (43 - 325)298 (72 - 369)
definitionCHROMAT_FILE: MSMg01no299_j05.b1 PHD_FILE: MSMg01no299_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:32 2005CHROMAT_FILE: MSMg01no299_j05.g1 PHD_FILE: MSMg01no299_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCTGTTAGACTGGATGAGGAAACATACACAGTAACCCTAAAACTTG
TCTAAAAAACATACTGATGAATGTAAAAACATCACAAAACACATTCCAGA
ATGAAGATTAAATAGTATAAAATAAGGAATATAAGGATTATTACTGTATC
AATTGCTGGCACAGTTGAGTGGAGACTCCACTCAATGTTGGGGTGGGAGG
CAGGATTGGGAGGGAGAAAGTGGTATCTGTAGCCTCTGTGTTCCGTGTGG
TTCTGACCTGCAAGGAAGGTGATGTTATGAGTTCTTTCTTAATTATATCA
GACCCCTGTCCTTCTTTTTTTTTTCTCCCCCCCCCCTAATTGGTATGGTT
TGATTGATGTTAAGAACACCCAACAGTAATGAAACAATAAAGAATTAGGG
AAGAGGAGACATAATACTAATTTGAACACATGGACCTGTACTACTATTTG
ACAATTTTGAACTATTTAAACGGTATTTACCACTTGAAAGTATGAAGACG
ACCTTAAGGAACTATGTATAACACTGCCGCGGCTGATTCTAGCTACAACG
CTGACAGAGAGGCACTCCCCCGCACGGACCCAATCGTGAATCAACTCACC
CCGTCAACGCCTTACCTCTGTGGCTACCTCCTTCGCTATCCCCCCCACAT
ATTCTACCTCTCCCATCACGGGTCCGTTCCCCCCTCTCCCACGTATGGTA
CACCTCCCCTCTCCTCGAGCCTGACACCCT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATTCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GATATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATATATTCACTGATAAGTGGA
TATTAGCTCCCAACCTAGGATTCCCAAGATAAAAGATACAATTGGCTAAA
CACATGAAACTCCAGAAGAATGAAGACCGAAGTGCGCACCCTATGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_j05.b1 MSMg01no299_j05.b1 CHROMAT_FILE:
MSMg01no299_j05.b1 PHD_FILE: MSMg01no299_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:32 2005
         (283 letters)



>mm_chr14_80555382_80556064
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctgttagactggatgaggaaacatacacagtaaccctaaaacttgtctaaa 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcttcctgttagactggatgaggaaacatacacagtaaccctaaaacttgactaaa 264

                                                                       
Query: 65  aaacatactgatgaatgtaaaaacatcacaaaacacattccagaatgaagattaaatagt 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacatactgatgaatgtaaaaacgtcacaaaacacattccagaatgaagattaaatagt 324

                                                                       
Query: 125 ataaaataaggaatataaggattattactgtatcaattgctggcacagttgagtggagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 ataaaataaggaatataaggattattactgtatcaattgctggcacaattgagtggagac 384

                                                                       
Query: 185 tccactcaatgttggggtgggaggcaggattgggagggagaaagtggtatctgtagcctc 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tccactcaatgttggggtgggaggcaggattgggagggagaaactggtatctgtagcctc 444

                                                  
Query: 245 tgtgttccgtgtggttctgacctgcaaggaaggtgatgt 283
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgttccgtgtggttctgacctgcaaggaaggtgatgt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)