Query= MSMg01no299_l04.b1 MSMg01no299_l04.b1 CHROMAT_FILE:
MSMg01no299_l04.b1 PHD_FILE: MSMg01no299_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:41 2005
(695 letters)
>mm_chr14_66348462_66349556
Length = 1095
Score = 1212 bits (627), Expect = 0.0
Identities = 674/701 (96%), Gaps = 20/701 (2%)
Strand = Plus / Plus
Query: 5 gaattccataaaactgttcacatccaatgtctgtccaatggaaaataatgtccatttcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattccataaaactgttcacatccaatgtctgtccaatggaaaataatgtccatttcct 253
Query: 65 gtggatcagcctaatacatgatgtgtatatttgtgcagcagaacactaactaggtgtctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtggatcagcctaatacatgatgtgtatatttgtgcagcagaacactaactaggtgtctt 313
Query: 125 ag----ggttttactgctgtgaacagacaccatgaccaaggcaagccttataaaaacaat 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agttagggttttactgctgtgaacagacaccatgaccaaggcaagccttataaaaacaat 373
Query: 181 atttaatcatggctggcttacaggttcagaggttcagtccattatcatcaaggtgggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 374 atttaatcatggctggcttacaggttcagaggttcagtccattatcatcaaggagggaac 433
Query: 241 atggcagtatccaggcaggcatggcacaggcagagctgagagttctacatcttcatccaa 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 434 atggcagtatccaggcaggcatggcgcaggcagagctgagagttctacatcttcatccaa 493
Query: 301 aggctgctagtggaagactgacttccaggcaaatagggtgagggtcttaagcccataccc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 494 aggctgctagtggaagactgacttccaggcaactagggtgagggtcttaagcccataccc 553
Query: 361 acagtgacacacctattccaacaaggccacacctccaaatggtgccactccctggtccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acagtgacacacctattccaacaaggccacacctccaaatggtgccactccctggtccaa 613
Query: 421 gaatatat-------cacactaggctctaacttaagagttgctaggaatcttttaaagtc 473
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaatatataaaccatcacactaggctctaacttaagagttgctaggaatcttttaaagtc 673
Query: 474 ccaaagccaacatcctgcctggtatcaacaatatctgcagatgattatagtgacagataa 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccaaagccaacatcctgcctggtatcaacaatatctgcagatgattatagtgacagataa 733
Query: 534 gtctggggtccactgttagcacagggcctgggatctacagaagcacattcattatcagct 593
||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 734 gtctggggtccactg---------ggcctgggatctattgaagcacattcattatcagct 784
Query: 594 acccttccatttcagtcaccttttattgagtacctgctatatgccatagacttccctgtt 653
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 acccttccgtttcagtcaccttttattgagtacctgctatatgccatagacttccctgtt 844
Query: 654 gttatttggacctctccactcaaccccttctcactcctcac 694
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gttatttggacctctccactcaaccccttctcactcctcac 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_l04.g1 MSMg01no299_l04.g1 CHROMAT_FILE:
MSMg01no299_l04.g1 PHD_FILE: MSMg01no299_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:41 2005
(608 letters)
>mm_chr14_66492079_66493086
Length = 1008
Score = 1046 bits (541), Expect = 0.0
Identities = 558/564 (98%)
Strand = Plus / Minus
Query: 43 aaatcatgcaatccaagggcccactttatgtgcacagtccctaaaccttgcttcctttcc 102
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aaatcatgcaatccaaggacccactttatgtgcacagtccctaaaccttgcttcctttcc 949
Query: 103 ttcaaggctgcaggactggtataccaggaagatgccaaaagtacttaccttcacttgaaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ttcaaggctgcaggactggtataccaggaagatgccaaaagtacttaccttcacttgaaa 889
Query: 163 caagatgtgttttaatagccatgtgggcaaggaggaaattatcgcctagattcagacaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 caagatgtgttttaatagccatgtgggcaaggaggaaattatcgcctagattcagacaaa 829
Query: 223 atcaggaggatttgtaactggtggcgtgtgctaaataatgctgaatattggcttgatctc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 atcaggaggatttgtaactggtggcgtgtgctaaataatgctgaatattggcttgatctc 769
Query: 283 tgtaggaggagatgttcggtaaagctggtccgagaccagctgcgtttgatgctttcccag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgtaggaggagatgttcggtaaagctggtccgagaccagctgcgtttgatgctttcccag 709
Query: 343 tttcctaatgacagtatagtcagggcatttacagacacataggtaatatgcaaagggcat 402
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 708 tttcctaatgacagtatagtcagggcatttacagacacataggtaatatgcaaaaggcat 649
Query: 403 ttacagacatgtagataatacaggcagaacacttgcagacatgtagatgatatagacagg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttacagacatgtagataatacaggcagaacacttgcagacatgtagatgatatagacagg 589
Query: 463 acacttacagacacataaataacataggcagaacatttacagacacatagataatataga 522
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 588 acacttacagacacataaataacgtaggcagaacatttacagacacatagataatataga 529
Query: 523 cagaatgtttacagaatgtanacaatatagacagggtgtttacagacatatagatgacgg 582
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 528 cagaatgtttacagaatgtaaacaatatagacagggagtttacagacatatagatgacgg 469
Query: 583 ctatgagtgtgattatggggctgg 606
|||||||||||||||||||||||
Sbjct: 468 ttatgagtgtgattatggggctgg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
