Query= MSMg01no300_g23.b1 MSMg01no300_g23.b1 CHROMAT_FILE:
MSMg01no300_g23.b1 PHD_FILE: MSMg01no300_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:35 2005
(335 letters)
>mm_chr14_114417551_114418281
Length = 731
Score = 410 bits (212), Expect = e-119
Identities = 299/338 (88%), Gaps = 23/338 (6%)
Strand = Plus / Plus
Query: 1 tgcaaaagcgtagacatacgatgaatgaattgatatcatcaacaaaatcagatttgaatc 60
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 215 tgcaaaaacgtagacatactatgaatgaattgatatcaacaacaaaatcagatttgaatc 274
Query: 61 atactattgaaaatgagcgtcaaat-cagaagtagctggttggtagactgactatgtagt 119
| |||||||||||||||| || ||| |||| ||| ||||||||||||||
Sbjct: 275 acactattgaaaatgagcttc-aatacagatgta-----ttggtagactgact------- 321
Query: 120 aggcctagct-cactgagtttgatccttgggactctatcaatgagcttgctggtaggcct 178
|||||| | |||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 322 --gcctag-tgcactgagtttgatcctcaggactctatcaatgagcttgcttgtaggcct 378
Query: 179 gtgatgccaacacctgggaggaagaggcaagcgtatcaggggtgcatggtcggccatcct 238
||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 379 gtgatgccaacacctgggaggtagaggcaagtgtatcaggggtgca----cggccatcct 434
Query: 239 catctgggacatcc-actcacagtcagcgattggatggatcacagagcccccaatggagg 297
||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 435 catctgggatttccgactcacagtcagctattggatggatcacagggcccccaatggagg 494
Query: 298 agctagagaaagtatccaaggagctaaagagatctgca 335
||||||||||||||| ||||||||||||||||||||||
Sbjct: 495 agctagagaaagtatacaaggagctaaagagatctgca 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 731
Length adjustment: 9
Effective length of query: 326
Effective length of database: 722
Effective search space: 235372
Effective search space used: 235372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_g23.g1 MSMg01no300_g23.g1 CHROMAT_FILE:
MSMg01no300_g23.g1 PHD_FILE: MSMg01no300_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:35 2005
(316 letters)
>mm_chr14_114629331_114630046
Length = 716
Score = 561 bits (290), Expect = e-164
Identities = 308/316 (97%), Gaps = 4/316 (1%)
Strand = Plus / Minus
Query: 1 aaaatcttttttaaaagttgcgttttgaaaataccttactaactaatgggctgccaaaaa 60
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 376 aaaatcttttttaaaagttgcattttgaaaataccttactaactaatgggttgccaaaaa 317
Query: 61 gcttacagattttaattagtaaaatcggttgcacttggtggacacttaaaaaaaagtata 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcttacagactttaattagtaaaatcggttgcacttggtggacacttaaaaaaaagtata 257
Query: 121 ctcgtgcctcatttctcatgtttttgtattccaatacaggctatttttactactagttgt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctcgtgcctcatttctcatgttattgtattccaatacaggctatttttactactagttgt 197
Query: 181 ttttgtttgtttgttttgttttgttagtttagttttgtttttgtttcttttgttttgctt 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttttgtttgttt----tgttttgttagtttagttttgtttttgtttcttttgttttgctt 141
Query: 241 tttattaaataagaattaattactgttatgtagctaagacagacaatatgcagttaagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tttattaaataagaattaattactgttatgtagctaagacagacaatatgcagttaagtg 81
Query: 301 gttgctactttattat 316
||||||||||||||||
Sbjct: 80 gttgctactttattat 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
