BAC Information

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BAC

Clone NameMSMg01-300P16
Chromosome14 (Build37)
Map Location 48,834,139 - 49,007,775
singlet/doubletdoublet
Overlap genePeli2, EG624367
Upstream geneWdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
Downstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300P16.T7 (MSMg01no300_p16.b1)MSMg01-300P16.TJ (MSMg01no300_p16.g1)
ACCAG427310AG427311
length738737
length of high quality
(start - end)
412 (127 - 538)194 (129 - 322)
definitionCHROMAT_FILE: MSMg01no300_p16.b1 PHD_FILE: MSMg01no300_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:15 2005CHROMAT_FILE: MSMg01no300_p16.g1 PHD_FILE: MSMg01no300_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,834,139 - 48,834,550)(49,007,583 - 49,007,775)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAAATCCGCGGA
ATTCATAAGCGTTTCAAAAAGAGGCGGGGCAGACCCTACTTCTACAGTGC
ACGCTGCTTATCCGGATCCTCACCCTAGTCAGACTCCTCCCATCCAACTC
TTCAATCCCCTTTCCTTGCACAGCATCAAATTCTACCTCCCCATAACTCC
TTTCTGCTTGTCTAATATTTGGTTCCTTGAAGCAACAGAGACGAATCTCT
TTACCATGTGGCCTTTGGGGTTTTGTGCCTCTCTCGGGTCCTTCAACAGA
TAACAAACCTCTTTCCTTGGTTAGATTTGGTGTGTCCAGACTTGTAGAGC
ATCACCGTCTGAAATCCACTGGGCATCTACTTTGCCTGCCCCTCAGACAC
TCCATGGTCATGATTGCTTGTGATATTCCAGTTGTGACCTAACCACATGT
AAGTGTAGCGATGGCCCAGTGCTTCTTTATGGCTGTGCGTTTCTGCAGCT
CCGTGGTGCTGGACCTTGCAGTGGTAGTAATACAGCAGCGGTGGGTGGTA
GATGAGTTCTCACCTCCCCGCTACATCACTCTCCAAACCCAGACTTTTAT
TCATGTGAACATAGTCATCCTGGAAACGGGGGCAATGAGCCTTTGCTTAA
AACAAAGAAAAAAAAAGTACACGGTGTACTGCCATTGCTTCTGTCTGGGT
GTGCTGAGAGACTATTCTGTTTATCTTTACTAAAGAAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTACTGTTTAAAGAACTCTCCAA
CACCCATGTTTGTAAATTTTTGCCCTTGCTAAAGGTAATTTTAAAGGAGG
TCAGAAGTGTGCACCTTGGGGAAATTTTGATGTTTTGGGTAGATTTTCAA
AAATGTCTTATAGCAGAAAGCTGTGGCTAGAAGCTCATGAGCTCAAGGAA
GGTAAAGGCCACACTACACATGTTGCCTGGGTCCCTTAGATCCAGGTCAG
CCATTTGTGGGACAGACCTCATGTTTTGGCTGCCATCCTTTGTGATCACG
ACGNCCAATTTTTACATGCATTCCGAGACGNGGCCCTCNGNAGAGATCAA
GCTTGGCTCATTTCTGCTTACCGTTAACTGTATTCCAATAGCTGGTGGGG
GCCACGCACCGGCAGGCATCCCATCAACACTTTTCAGTTCCGGCGACTTC
AAATGCCGAGTGCTTTCTTCCCGTGTTAAAGAAGCAGGTGAGGGGCCAGC
TGGCATCTCTGTGCCAGCAAGATACCTATACGTCAGTTGATGCCAGAGTT
TGCTGACCGTATCCTTAGCTGCCTGGCGCATGAGTTTATACTCTCTGCCC
GTGGTAACTCCTGTTATCCATAACTGCCCTGTACTACTGTTGTATATGCC
TACAACAGCAAGCAGTTCCCATCTCTGAAAGCTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_p16.b1 MSMg01no300_p16.b1 CHROMAT_FILE:
MSMg01no300_p16.b1 PHD_FILE: MSMg01no300_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:15 2005
         (412 letters)



>mm_chr14_48833939_48834750
          Length = 812

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcagactcctcccatccaactcttcaatcccctttccttgcacagcatcaaattctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcagactcctcccatccaactcttcaatcccctttccttgcacagcatcaaattctac 260

                                                                       
Query: 61  ctccccataactcctttctgcttgtctaatatttggttccttgaagcaacagagacgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccccataactcctttctgcttgtctaatatttggttccttgaagcaacagagacgaat 320

                                                                       
Query: 121 ctctttaccatgtggcctttggggttttgtgcctctctcgggtccttcaacagataacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctttaccatgtggcctttggggttttgtgcctctctcgggtccttcaacagataacaa 380

                                                                       
Query: 181 acctctttccttggttagatttggtgtgtccagacttgtagagcatcaccgtctgaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctctttccttggttagatttggtgtgtccagacttgtagagcatcaccgtctgaaatc 440

                                                                       
Query: 241 cactgggcatctactttgcctgcccctcagacactccatggtcatgattgcttgtgatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgggcatctactttgcctgcccctcagacactccatggtcatgattgcttgtgatat 500

                                                                       
Query: 301 tccagttgtgacctaaccacatgtaagtgtagcgatggcccagtgcttctttatggctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagttgtgacctaaccacatgtaagtgtagcgatggcccagtgcttctttatggctgt 560

                                                               
Query: 361 gcgtttctgcagctccgtggtgctggaccttgcagtggtagtaatacagcag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgtttctgcagctccgtggtgctggaccttgcagtggtagtaatacagcag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no300_p16.g1 MSMg01no300_p16.g1 CHROMAT_FILE:
MSMg01no300_p16.g1 PHD_FILE: MSMg01no300_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:15 2005
         (194 letters)



>mm_chr14_49007383_49007976
          Length = 594

 Score =  350 bits (181), Expect = e-101
 Identities = 190/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaggtaattttaaaggaggtcagaagtgtgcaccttggggaaattttgatgttttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctaaaggtaattttaaaggaggtcagaagtgtgcaccttggggaaattttgatgttttgg 334

                                                                       
Query: 61  gtagattttcaaaaatgtcttatagcagaaagctgtggctagaagctcatgagctcaagg 120
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 333 gtagattttcaaaaatgtcttagagtagaaagctgtggctagaagctcatgagctcaagg 274

                                                                       
Query: 121 aaggtaaaggccacactacacatgttgcctgggtcccttagatccaggtcagccatttgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 273 aaggtaaaggccacactacacatgttgcctgggtcccttagatccaggccagccatttgt 214

                        
Query: 181 gggacagacctca 193
           |||||||||||||
Sbjct: 213 gggacagacctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)