BAC Information

Click to search

BAC

Clone NameMSMg01-301N17
Chromosome14 (Build37)
Map Location 119,500,700 - 119,668,682
singlet/doubletdoublet
Overlap geneHs6st3
Upstream geneTgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301N17.T7 (MSMg01no301_n17.b1)MSMg01-301N17.TJ (MSMg01no301_n17.g1)
ACCAG427924AG427925
length779772
length of high quality
(start - end)		321 (41 - 361)602 (71 - 672)
definitionCHROMAT_FILE: MSMg01no301_n17.b1 PHD_FILE: MSMg01no301_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:21 2005CHROMAT_FILE: MSMg01no301_n17.g1 PHD_FILE: MSMg01no301_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,668,368 - 119,668,682)(119,500,700 - 119,501,301)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGGTAAGAATCCAGAGCAGGCACATCCTCACACATGACTGACTTAGGTA
TAACTGAAAGAATAATCTGTTAATAACTAGTAAAATTAAAGATAAAAAGG
TCAAAGGTCAAACAATGATGCCCCAAGCTAGATGTCTTGGAGAAAATGCT
CTCTCATGTGTGTATATGAGAATGTGAACAACATACCTGTTTGTATTTTA
AAAACATATTCACCCATCACCAAGAGAAGAGATAAGTCTACTAATTCAAT
ACAATACAGATCAGAGGGCAGCAAATAAAAACTGAGCATGCTCTAAGTGA
TCAATCTCCTTTATTGTGTTACCCCGCACCCCCAGGCTGAGAAAGAACTC
TCTCTGTGTGTGTGTGTGTGTGAGAAAAAAAAAAAAAGTGTGTGGGGGGG
GGGGCTTTTCCCCTTTTCTTCTTTTTCTTTTTCCTTTTATTTCTTTCCCT
GTTCTTTTTTGTTTTTCGTGCCTATTTTTTTTTTTCTATATATTTTTCTT
TTTCTTTCTTTTTTTAATTTTTACGCGCATCTTATTATCTATCTTATTTT
CCCTCCTTTCTTTTTCTTTATCTTTATTCACTTTTCTCTCCCTTTTTCTA
ATCTTACTTTTTCTATCCATTTATTTCTTCCTTATTTGTAGAGCTTCTAC
TATCCCTTTTCTTTTATCTCCCAAATCTTTTTTTTTTCACTATTAATTTT
AATTTTTTTCATCCCTTTTTCCTTCCCCG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAAGGTGCAGAGCGGGCGACATTCATTCA
GTGAGTATAATGATGCTGTGTGAGAATAACTTTAGATAATAAGAATCTTA
ATTTTCTGAGCTGAAATGAAGTCTTAAAGTTTAAGTGAAGTTTATAACCC
CCTTTTGTTTTTAGATACCCTTTGTCGTAAAGTAGACCCTATTGTCATGT
TTTAACTGGGACATTTTAAATATGCAAGAGCATCCTGCCCTTTAGTCTCA
TTGGGAAGTATTCATAACTTAAGGAATTTGTAACATCTCCTTCCTAGGCA
AGATTGTGTCAAAATTATAAGCAAATGAATAATGGTTAAGAGTGTCTAAG
GATCAGCAAATCCAATTTTATAACTTTCCATGTTTTATTTAAAATAAGTT
ACTAATGTCCAACTCCATTCTATTTGTTTGTTTTTGAAGTCCCAGGATTG
AAACAGAGCTTTGGGTATACTAAGCTGGCATTTTATAACTGAGCTACCCA
ACCTCTAAGGACATGTCTCAATGCATGTGTGTATGCTTGCATGTGCAGTT
CATCATGGGGGCCTTCAAACAGCAGGTAGTGACTGTGAACTGTAAGTTTT
AGATTAATTATTTTGACAATGTGAGAACTGGATACTTGACATTTAACAAT
TATCTTCTATGCTCTCACACATAGCTAGTGAGGCCCAAGTACTTACTATT
TGGTGGGAAAAAATATGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_n17.b1 MSMg01no301_n17.b1 CHROMAT_FILE:
MSMg01no301_n17.b1 PHD_FILE: MSMg01no301_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:21 2005
         (321 letters)



>mm_chr14_119668164_119668884
          Length = 721

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggtaagaatccagagcaggcacatcctcacacatgactgacttaggtataac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcttggtaagaatccagagcaggcacatcctcacacatgactgacttaggtataac 460

                                                                       
Query: 65  tgaaagaataatctgttaataactagtaaaattaaagataaaaaggtcaaaggtcaaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgaaagaataatctgttaataactagtaaaattaaagataaaaaggtcaaaggtcaaaca 400

                                                                       
Query: 125 atgatgccccaagctagatgtcttggagaaaatgctctctcatgtgtgtatatgagaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgatgccccaagctagatgtcttggagaaaatgctctctcatgtgtgtatatgagaatg 340

                                                                       
Query: 185 tgaacaacatacctgtttgtattttaaaaacatattcacccatcaccaagagaagagata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgaacaacatacctgtttgtattttaaaaacatattcacccatcaccaagagaagagata 280

                                                                       
Query: 245 agtctactaattcaatacaatacagatcagagggcagcaaataaaaactgagcatgctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agtctactaattcaatacaatacagatcagagggcagcaaataaaaactgagcatgctct 220

                          
Query: 305 aagtgatcaatctcc 319
           |||||||||||||||
Sbjct: 219 aagtgatcaatctcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_n17.g1 MSMg01no301_n17.g1 CHROMAT_FILE:
MSMg01no301_n17.g1 PHD_FILE: MSMg01no301_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:21 2005
         (602 letters)



>mm_chr14_119500500_119501501
          Length = 1002

 Score = 1141 bits (590), Expect = 0.0
 Identities = 599/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggtgcagagcgggcgacattcattcagtgagtataatgatgctgtgtgagaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggtgcagagcgggcgacattcattcagtgagtataatgatgctgtgtgagaataac 260

                                                                       
Query: 61  tttagataataagaatcttaattttctgagctgaaatgaagtcttaaagtttaagtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagataataagaatcttaattttctgagctgaaatgaagtcttaaagtttaagtgaag 320

                                                                       
Query: 121 tttataacccccttttgtttttagataccctttgtcgtaaagtagaccctattgtcatgt 180
           ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 321 tttataacctccttttgtttttagataccctttgtcgtaaaatagactctattgtcatgt 380

                                                                       
Query: 181 tttaactgggacattttaaatatgcaagagcatcctgccctttagtctcattgggaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaactgggacattttaaatatgcaagagcatcctgccctttagtctcattgggaagta 440

                                                                       
Query: 241 ttcataacttaaggaatttgtaacatctccttcctaggcaagattgtgtcaaaattataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcataacttaaggaatttgtaacatctccttcctaggcaagattgtgtcaaaattataa 500

                                                                       
Query: 301 gcaaatgaataatggttaagagtgtctaaggatcagcaaatccaattttataactttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaatgaataatggttaagagtgtctaaggatcagcaaatccaattttataactttcca 560

                                                                       
Query: 361 tgttttatttaaaataagttactaatgtccaactccattctatttgtttgtttttgaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttttatttaaaataagttactaatgtccaactccattctatttgtttgtttttgaagt 620

                                                                       
Query: 421 cccaggattgaaacagagctttgggtatactaagctggcattttataactgagctaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaggattgaaacagagctttgggtatactaagctggcattttataactgagctaccca 680

                                                                       
Query: 481 acctctaaggacatgtctcaatgcatgtgtgtatgcttgcatgtgcagttcatcatgggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctctaaggacatgtctcaatgcatgtgtgtatgcttgcatgtgcagttcatcatgggg 740

                                                                       
Query: 541 gccttcaaacagcaggtagtgactgtgaactgtaagttttagattaattattttgacaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccttcaaacagcaggtagtgactgtgaactgtaagttttagattaattattttgacaat 800

             
Query: 601 gt 602
           ||
Sbjct: 801 gt 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |