BAC Information

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BAC

Clone NameMSMg01-302B07
Chromosome14 (Build37)
Map Location 50,264,795 - 50,265,109
singlet/doubletsinglet
Overlap genenone
Upstream geneOtx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302B07.T7 (MSMg01no302_b07.b1)MSMg01-302B07.TJ (MSMg01no302_b07.g1)
ACCAG428083AG428084
length739740
length of high quality
(start - end)
323 (44 - 366)583 (72 - 654)
definitionCHROMAT_FILE: MSMg01no302_b07.b1 PHD_FILE: MSMg01no302_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:38 2005CHROMAT_FILE: MSMg01no302_b07.g1 PHD_FILE: MSMg01no302_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGTGTGATCTTTATCACAACTTGTGAGAAATCAACTTATAATCTTA
AAGACATATTGACTATATGGAATTGTGCAGAAACACTGACTGGGAATGCC
TGTGTGCATCAATAGCTTGCTTTTGAAAGTACTTGTTAATGGTGCACAAA
GGCCAGTTTTATTATAAGGTTTCCACCCAGGCATAAAAAAACATGTCTGT
ATCTGTCCTTCCTAGTCCATACCATACTTGCCCCTTTCTTCCCCCACTGG
TCATCTTCTTCTGTAGTAGAGCCCCCATTATGCTTAGGTCTTTTGTTTTT
TGTTTTTTAAATATTTATTTCTCTGCCCCCCCCCCGCCTTATATCAGTGT
ACTGGCTGGTTTTGCCTGTCAACTTGACACAAAAATAAAATTATCACAGA
GAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATAAGATCCAGCTGTGGGGC
ATTTTCTCAATTAGTGATTAAAGGAGGAGGGCCCCTTGTGGGTAATGCCA
TTCCTGGGCTGGTAGTCTTGGGTTCTACAAGAGAGCAAGCTGAGCAAGCC
AGGGAAGTAAACCAGTAAGAAACATCCCTCTAGGGCCTTTGCATCAGCTC
CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAAC
AGCAGTATGGAAATGTAAGCTAAATAAACCCTTTTCTCN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAACGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACCACCAGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCATAAAGAAACTCACACAATATCTACTCACTGATAAGTGGA
TATTAGCCCAAAACCTAGGATACCCAAGATATTAGATATAATTTCCTAAA
CACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_b07.b1 MSMg01no302_b07.b1 CHROMAT_FILE:
MSMg01no302_b07.b1 PHD_FILE: MSMg01no302_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:38 2005
         (323 letters)



>mm_chr14_50264591_50265312
          Length = 722

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtgtgatctttatcacaacttgtgagaaatcaacttataatcttaaagacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcttgtgtgatctttatcacaacttgtgagaaatcaacttataatcttaaagacat 460

                                                                       
Query: 65  attgactatatggaattgtgcagaaacactgactgggaatgcctgtgtgcatcaatagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 attgactatatggaattgtgcagaaacactgactgggaatgcctgtgtgcatcaatagct 400

                                                                       
Query: 125 tgcttttgaaagtacttgttaatggtgcacaaaggccagttttattataaggtttccacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgcttttgaaagtacttgttaatggtgcacaaaggccagttttattataaggtttccacc 340

                                                                       
Query: 185 caggcataaaaaaacatgtctgtatctgtccttcctagtccataccatacttgccccttt 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caggcataaaaaaa-atgtctgtatctgtccttcctagtccataccatacttgccccttt 281

                                                                       
Query: 245 cttcccccactggtcatcttcttctgtagtagagcccccattatgcttaggtcttttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cttcccccactggtcatcttcttctgtagtagagcccccattatgcttaggtcttttgtt 221

                           
Query: 305 ttttgttttttaaata 320
           ||||||||||||||||
Sbjct: 220 ttttgttttttaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)