BAC Information

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BAC

Clone NameMSMg01-302C01
Chromosome14 (Build37)
Map Location 96,245,171 - 96,245,465
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302C01.T7 (MSMg01no302_c01.b1)MSMg01-302C01.TJ (MSMg01no302_c01.g1)
ACCAG428118AG428119
length745746
length of high quality
(start - end)
198 (39 - 236)296 (70 - 365)
definitionCHROMAT_FILE: MSMg01no302_c01.b1 PHD_FILE: MSMg01no302_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005CHROMAT_FILE: MSMg01no302_c01.g1 PHD_FILE: MSMg01no302_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
ACGCATATGGATGGACCTGGGGGGCATCATCCTGAGTGAGGTAACACAAT
CACAAAAAACTCAAATGATATGTACTCACTGATAAGTGAATATTAGCCCA
GAAACTTAGTATACCCGAGATATAAGATACAATTTGCAAAACACATGAAA
CTGAAGAAAAACGAAAACCAAAGTGTGGACACTTTGNCNCNNCCTNTCTT
AGAATTGGAAACAGTCACCCATGAAAGGAGTTACAGAGACAAAGTTTGGA
GCTGAGACAAAAGGATGGACCATCTAGAGACCACCATATCCAGGGAACCA
TCCCATAATTAGCCTCCTTTTTTGTATGACACCACTCTGCAAACACTAGC
AAGCGTTTGCTGAAAGGACCTGATATAGCTGTCTCTTGTGAGACTAGGCC
GGGGGCTACCAAAAACATAAGTGCATGCTCACAGTCAGCTATTGGATGGA
GCACAGGGTCTTCCATGGAGGAGCTAGAGAAAGATCCCAGGGAGCTAAAG
AAATCTGGAACCCTGTAGGTGGCACCAACCTTTATGAACTAAACCCGGTA
CCGCCCAAACTTCTTGGACTCTTAGTCGGCAAAGGGTATCCAAAAGAAGG
ACCCTAACTCGGGCCTTTCACTGGGAAAAAAAAAGGGGCCCCTTTTGGGA
CATATTGGAAACCTTTTATTTTTGGCCCCCCCCGTACAAGGGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGAAAATGTTTTGCTATTAAAACCTATCAG
CCCCTCTAAGGACATATTTGATTAAATGATGATTAACTGAACAACAAGGT
CACAAAAGTATTAATGGATGAATCAAAATCGAATCATCTTTAAAATATTA
TAAACTTGGAGAAATAAACAAGAAAACATACTATATTCCATGTAATTCTG
TGTATATAAGTTTGAAGAGCAAAGAAATCTAGCTAATAATAAATGATAGA
AAACTCACTTAAATACTTTGTAAGTATTAGTTTCAAAACTGAAAGAAGAA
CATACTTTGATTTATTTTTATTTCACACCCCGCACTTCCAAGGGAGATAG
AATTTTAAAAATTCTCTATCCTATTTATAAAAAAAAAAAAGCATTCGATG
AGTAGAAATTTTATAATTTGGATCAATATTCATTACAGCAAGAAAAATAA
GGTCATTTTACACAAGAAAATATTCTAAAGTGAGGTTTTAGATTTTTAAT
GGGTCAAATATTTAAAGGAATGTATTTAAAAGTGCTTTTATGGGCGGCTC
CATCTTCGGCTCCAGACAACCGGCCACCTTCCTGGTAGGAGCACAGGGGT
CCGCCCAGCCCAAGAGGTTTCTGCCTCAGACCCCGGTGGGGAGCCACCTT
GGCTCCAGGACTCCGCGGAGGGCAGGCTGCACGTTCGAGGTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_c01.g1 MSMg01no302_c01.g1 CHROMAT_FILE:
MSMg01no302_c01.g1 PHD_FILE: MSMg01no302_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:42 2005
         (296 letters)



>mm_chr14_96244971_96245666
          Length = 696

 Score =  495 bits (256), Expect = e-144
 Identities = 286/296 (96%), Gaps = 2/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaaatgttttgctattaaaacctatcagcccctctaaggacatatttgattaaatga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgaaaatgttttgctattaaaacccatcagcccctctaaggacatatttgattaaatga 436

                                                                       
Query: 61  tgattaactgaacaacaaggtcacaaaagtattaatggatgaatcaaaatcgaatcatct 120
           ||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||||
Sbjct: 435 tgattaactgaacaaaaaagccacaaaagtattaatggatgaatcaaaatagaatcatct 376

                                                                       
Query: 121 ttaaaatattataaacttggagaaataaacaagaaaaca-tactatattccatgtaattc 179
           | ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 375 taaaaatattataaacttggagaaataaacaagaaaa-agtactatattccatgtaattc 317

                                                                       
Query: 180 tgtgtatataagtttgaagagcaaagaaatctagctaataataaatgatagaaaactcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtgtatataagtttgaagagcaaagaaatctagctaataataaatgatagaaaactcac 257

                                                                   
Query: 240 ttaaatactttgtaagtattagtttcaaaactgaaagaagaacatactttgattta 295
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttaaattctttgtaggtattagtttcaaaactgaaagaagaacatactttgattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)