BAC Information

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BAC

Clone NameMSMg01-302E03
Chromosome14 (Build37)
Map Location 81,832,974 - 81,833,263
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828, LOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302E03.T7 (MSMg01no302_e03.b1)MSMg01-302E03.TJ (MSMg01no302_e03.g1)
ACCAG428211AG428212
length731735
length of high quality
(start - end)
318 (41 - 358)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no302_e03.b1 PHD_FILE: MSMg01no302_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:51 2005CHROMAT_FILE: MSMg01no302_e03.g1 PHD_FILE: MSMg01no302_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTGCTTTTAATTGCTAAGTAGTACTCCATTGTGTAAATGTACCACATTT
TCTGTATCCATTCCCCTGTTGAGGGACATCTGGTTTCTTTCCAGCTTCTG
GCTATTATAAATAAGGCTGCTATGAACATAGTAGAGCATGTGTCCTCAAT
ACCAGTTGTAACATCTTCTAGGTATATGCCCTTGAGAGGTATTGCTGGAT
CTGCTGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAGACTGATATC
CAGAGTGGCTGTACCAGTTTACAATCCCACCAACAATGGAGGAGTGTCCC
CCTTTCTTTATATCCTTGCCACCATCTGCTGTCACCTGAATTTTCGATCC
TAGCCATTTTGACTGGTGCAAGGTGAAATCTGAATAAAACAGCAATGGCT
TGTGCCATAAGATTGAGAATTTACAAATGGGACCTCATAAAATTGCAAAG
CTTCTGTAAGGCAAAAAACACTGTCAATAAGACAAAAATGTCACCAACAG
ATTGTGAAAGGATCTTTACCAATCCTAAATCAAATAGGGGACAAATATCC
AATATATATACACAGATATATATATATATATATATATATATATATATATA
TATGCTCAAGAATGGACTTCAGAAATCAAATAACCCTATTAAAAATGGGG
TACAGAGCTAAACAAAGAATTCTCAACAGAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTACAAATAATTCAATAAATTTACAT
GTTTTTTATTATGTAAGTAAATGTGAGTTCCTTTAACTATTAACTCAGAA
AAAAAGAGCAACCTCTGAATTCCCTGCTCTCTTTCTCCTTATCTTAAAGA
AGAAAAATAAAAAGAAGGAAAAATAGCCTGTTTCTTTCTGAAGTCATTAA
CAATCCAGGCAAAACAGGGAAACACCACGCCCTTATAAATTGGCTTGCTC
TTTGTTTAATTTTATTTTTGCCACTTACCTAAGGATTTTTAGATACAAAA
TCACTTTTGTTATGTTATCCCCCCCCACCACTTTTCATAAACATTTATAT
CCTCCCAATTTCTAACAAAATGTTCAAAGAAACTGAATATCTCTCCTATA
GGCTAGTGACACATGTTTATCAGTTAGAAACCCTAATCAAGTGTTAAGAT
TTGTGCTAGTCAGGAGAGACACAGTTATTCTGTGGAAATGAAAATCTCAG
CTTCTTGAGATGAGAGTGGCTTTGTCTTGTTGATGAGGTGTGTTATATCA
CATGTCACCAGAGGGGCTCTTTTCCAGGATGATAGTGATTGCGTTTTAAC
ACATTAGAGTAGTCAGGAGAAAAAGGAGAAGATGGTAAACAAAGTGTTAG
CTCTTAAAACTGAAGCTCANAATCATACGAGGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_e03.g1 MSMg01no302_e03.g1 CHROMAT_FILE:
MSMg01no302_e03.g1 PHD_FILE: MSMg01no302_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:51 2005
         (289 letters)



>mm_chr14_81832774_81833463
          Length = 690

 Score =  455 bits (235), Expect = e-132
 Identities = 277/291 (95%), Gaps = 3/291 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttacaaataattcaataaatttacatgttttttattatgtaagtaaatgtgagttc 60
           ||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||
Sbjct: 490 tttgttacaaataattcaacagatttgcatgttctttattatgtaagtaaatgtgagttc 431

                                                                       
Query: 61  ctttaactattaactcagaaaaaaa-gagcaacctctgaattccctgctctctttctcct 119
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 430 ctttaactattaactcagaaaaaaatgagcaacctctgaattccctgctctctttctcct 371

                                                                       
Query: 120 tatcttaaagaagaaaaat-aaaaagaaggaaaaatagcctgtttctttctgaagtcatt 178
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tatcttaaagaagaaaaataaaaaagaaggaaaaatagcctgtttctttctgaagtcatt 311

                                                                       
Query: 179 aacaatccaggcaaaacagggaaacaccacgcccttataaattggcttgctctttgttta 238
           | | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| 
Sbjct: 310 acccatccaggcaaaacagggaaacaccatgcccttataagttggcttgctctttgtttg 251

                                                              
Query: 239 attttatttttgccacttacctaaggatttttagatacaaaatcacttttg 289
           ||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 250 attttatttttgccacttaactaagaatttt-agatacaaaatcacttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)