BAC Information

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BAC

Clone NameMSMg01-302F19
Chromosome14 (Build37)
Map Location 76,074,930 - 76,075,517
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik
Downstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302F19.T7 (MSMg01no302_f19.b1)MSMg01-302F19.TJ (MSMg01no302_f19.g1)
ACCAG428277
length734732
length of high quality
(start - end)
---583 (75 - 657)
definitionCHROMAT_FILE: MSMg01no302_f19.b1 PHD_FILE: MSMg01no302_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:59 2005CHROMAT_FILE: MSMg01no302_f19.g1 PHD_FILE: MSMg01no302_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGACAAGGAAGGTTGTCTAGA
TCAAACCATAGGTATGCAAATGAGGTCTGCAGACAGAAGGGACCTCGTCA
GTCACCCTGTCCAGAGGTGGGGCTTTCTCCACTGAACCCAAAATCAACAG
GTGGGGATCACAAAGAACACCCCTGCTCTGGGCCCCAAATGCATAGTAAG
GGCACAGAATGAACTAAGTCCATCCCATGGCTCGCTACCCGGTTTCCTGG
GCTCTCTGGATGTTCCATCTTGACTGACATCCTGAAGCTGAGGCAACAAG
CCACTGTCATTTCCCTAGTGACCCAGTTATCCAGTTAGAGCCACTTCCTC
CAAACCCTAATTTAGGAGCCTCATCTTCCCGGGAGGAGGGAGAGAGACCA
GAGCTCTAACTATCAGTTCCACAATCCAATTTGCACCCCCCATCACGCTG
AAGACCTGAAGCCCTTTTTCTTTTCCTGAGCCACCGGCTAGGGCTGACAC
TAAGCACAAGTGTATGCAGTATTCCTGGTAGATCCTCTTGAACTGTTTGG
ACTAGGGAATCCTCTCCTGTCTTGACTTTGCAACCGTGATATGCAGGTCC
AGAAATCAGCAAATTTGAGAGAACTAATGGGAGATAGATACAGTTTTTGG
AATTTCTGACATAGAATCACATTCAGACTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_f19.g1 MSMg01no302_f19.g1 CHROMAT_FILE:
MSMg01no302_f19.g1 PHD_FILE: MSMg01no302_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:59 2005
         (583 letters)



>mm_chr14_76074730_76075717
          Length = 988

 Score = 1067 bits (552), Expect = 0.0
 Identities = 577/588 (98%), Gaps = 5/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctgacaaggaaggttgtctagatcaaaccataggtatgcaaatgaggtctgcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctgacaaggaaggttgtctagatcaaaccataggtatgcaaatgaggtctgcagac 260

                                                                       
Query: 61  agaagggacctcgtcagtcaccctgtccagaggtggggctttctccactgaacccaaaat 120
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 agaagggaccttgtcagtcaccctgtcgagaggtggggctttctccactgaacccaaaat 320

                                                                       
Query: 121 caacaggtggggatcacaaagaacacccctgctctgggccccaaatgcatagtaagggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaggtggggatcacaaagaacacccctgctctgggccccaaatgcatagtaagggca 380

                                                                       
Query: 181 cag-----aatgaactaagtccatcccatggctcgctacccggtttcctgggctctctgg 235
           |||     ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaattaaatgaactaagcccatcccatggctcgctacccggtttcctgggctctctgg 440

                                                                       
Query: 236 atgttccatcttgactgacatcctgaagctgaggcaacaagccactgtcatttccctagt 295
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttccatcttgacggacatcctgaagctgaggcaacaagccactgtcatttccctagt 500

                                                                       
Query: 296 gacccagttatccagttagagccacttcctccaaaccctaatttaggagcctcatcttcc 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacccagttatccagttagagccacttcctccaaaccctaatttaggagcctcatcttcc 560

                                                                       
Query: 356 cgggaggagggagagagaccagagctctaactatcagttccacaatccaatttgcacccc 415
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgggaggaggaagagagaccagagctctaactatcagttccacaatccaatttgcacccc 620

                                                                       
Query: 416 ccatcacgctgaagacctgaagccctttttcttttcctgagccaccggctagggctgaca 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatcacgctgaagacctgaagccctttttcttttcctgagccaccggctagggctgaca 680

                                                                       
Query: 476 ctaagcacaagtgtatgcagtattcctggtagatcctcttgaactgtttggactagggaa 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaagcacaagtgtatgcagtattcctggtagatcctcttgaactgtttggactagggaa 740

                                                           
Query: 536 tcctctcctgtcttgactttgcaaccgtgatatgcaggtccagaaatc 583
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 tcctctcctgtcttgactttgcaaccgtgataggcaggtccagaaatc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 988
Length adjustment: 10
Effective length of query: 573
Effective length of database: 978
Effective search space:   560394
Effective search space used:   560394
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)