BAC Information

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BAC

Clone NameMSMg01-303C09
Chromosome14 (Build37)
Map Location 88,656,889 - 88,657,561
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303C09.T7 (MSMg01no303_c09.b1)MSMg01-303C09.TJ (MSMg01no303_c09.g1)
ACCAG428823AG428824
length741746
length of high quality
(start - end)
698 (44 - 741)673 (74 - 746)
definitionCHROMAT_FILE: MSMg01no303_c09.b1 PHD_FILE: MSMg01no303_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:59 2005CHROMAT_FILE: MSMg01no303_c09.g1 PHD_FILE: MSMg01no303_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTAGCTCTGTACACCATTTTTAATAAGGTTATTTGTTTCTCT
GGAGCCTAACTTTTTGAGTTCTTTGTAGATATTGGATATTAGCCCCCTAT
ACAATTTAGGATTGGTAAAAATCTTTTCCCAGTCTGTTGGTTGCCTTTTT
GTCTTATTGAAAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTTGATTCTTGATCTTACATCACACGCCATTGCTGTTCTGT
TCAAGAATTTTTCTCCTGTGCCCATATCTTCTAGGCTCTTCCCCACTTTC
TCCTCTATAAAGTTTCAGTCTCTCTGGTTTTCTGTGGAGTTCATTGATCC
ACTTGAAGTTGAGCTTTGTACAATGAGATAAGAAAGACTCAATTTGCATT
CTTCAACATTCTAACTGCCAGTTGAGCCAACACCATTTGTTGAAAGTACT
GTCTTTTTTTTCCACTGAATGGTTTTAGCTCCTTTGTCAAAGATCAAGTG
ACCATATGTTTGAGTTCATTTCTGGGTCTTCAGTTCTATCCCATTGAAAT
ACCTGTCTGTCACTGTATCAGTACCATGCACTTTTGATCATAATTGCTCT
GTAGTATAGCTTGAGGTCAGGGATGGTGATTCCACCTGAGGTTTTTTTAT
TGTTGAGAAAAGTTTTTGCTCTCCTAGGGTTTTTGTTATTC
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAAAGAAGTAAATACCACCAAACAT
AGCATCACACACGTACAAAGGAGGACTATAAAAACAATATTTAGCAAAAA
AATAATCCATACAAAATAAAAGCAAAATGGAAATTGTTGCAAATGTAAGT
AAAAATTACAGAACTAAATTATACCATTAGAGATACATTTCCTTGGTTAC
AGAATAAGGACAGAATAAATCTGGATGAATAAATAAACACAGATAGAACC
ATAAACAGGACTAAGAAAAAAAGAAACGATTTTAAAAAGTGGAAAATTCT
TCACAGAGATAAAAAATGAATAAATATAAGCATTATTATGATTCATAGAT
AATTACCAAGATGTTTGAAAATAGTGTATTACAGACAAGTAGATGGGAGA
CATAAAAAGATGAGAATTAGCAAACAAAAATATTTTTCAAGAGAAAATAT
ATAAATATAGCATACATAGAAATAAGTCATGATTCAGATATTGAACAAAA
ATAAAAGATTATAAAAAGAATTTGAGATAGATACACAAAGGATACATGGT
GGAAGAAGGGGACCAGGAATTCTGTTATAGATTGTGTCTCCTAGAAACAA
TAAGGAGTTACACCTTGAAAACTTAAGAATGGAGCCACCTAAACAAGACC
TGAATAACAGACATATCAACAGACATGCTAAGGCACTGACAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_c09.g1 MSMg01no303_c09.g1 CHROMAT_FILE:
MSMg01no303_c09.g1 PHD_FILE: MSMg01no303_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:59 2005
         (673 letters)



>mm_chr14_88656836_88657908
          Length = 1073

 Score = 1301 bits (673), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaagaagtaaataccaccaaacatagcatcacacacgtacaaaggaggactataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aataaagaagtaaataccaccaaacatagcatcacacacgtacaaaggaggactataaaa 667

                                                                       
Query: 61  acaatatttagcaaaaaaataatccatacaaaataaaagcaaaatggaaattgttgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acaatatttagcaaaaaaataatccatacaaaataaaagcaaaatggaaattgttgcaaa 607

                                                                       
Query: 121 tgtaagtaaaaattacagaactaaattataccattagagatacatttccttggttacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgtaagtaaaaattacagaactaaattataccattagagatacatttccttggttacaga 547

                                                                       
Query: 181 ataaggacagaataaatctggatgaataaataaacacagatagaaccataaacaggacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ataaggacagaataaatctggatgaataaataaacacagatagaaccataaacaggacta 487

                                                                       
Query: 241 agaaaaaaagaaacgattttaaaaagtggaaaattcttcacagagataaaaaatgaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaaaaaaagaaacgattttaaaaagtggaaaattcttcacagagataaaaaatgaataa 427

                                                                       
Query: 301 atataagcattattatgattcatagataattaccaagatgtttgaaaatagtgtattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atataagcattattatgattcatagataattaccaagatgtttgaaaatagtgtattaca 367

                                                                       
Query: 361 gacaagtagatgggagacataaaaagatgagaattagcaaacaaaaatatttttcaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gacaagtagatgggagacataaaaagatgagaattagcaaacaaaaatatttttcaagag 307

                                                                       
Query: 421 aaaatatataaatatagcatacatagaaataagtcatgattcagatattgaacaaaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaatatataaatatagcatacatagaaataagtcatgattcagatattgaacaaaaata 247

                                                                       
Query: 481 aaagattataaaaagaatttgagatagatacacaaaggatacatggtggaagaaggggac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaagattataaaaagaatttgagatagatacacaaaggatacatggtggaagaaggggac 187

                                                                       
Query: 541 caggaattctgttatagattgtgtctcctagaaacaataaggagttacaccttgaaaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 caggaattctgttatagattgtgtctcctagaaacaataaggagttacaccttgaaaact 127

                                                                       
Query: 601 taagaatggagccacctaaacaagacctgaataacagacatatcaacagacatgctaagg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 taagaatggagccacctaaacaagacctgaataacagacatatcaacagacatgctaagg 67

                        
Query: 661 cactgacaaaaga 673
           |||||||||||||
Sbjct: 66  cactgacaaaaga 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)