BAC Information

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BAC

Clone NameMSMg01-304B08
Chromosome14 (Build37)
Map Location 108,134,226 - 108,135,003
singlet/doubletsinglet
Overlap geneLOC668752
Upstream genenone
Downstream geneEG668754, LOC668757, EG668761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B08.T7 (MSMg01no304_b08.b1)MSMg01-304B08.TJ (MSMg01no304_b08.g1)
ACCAG429482AG429483
length1,2931,313
length of high quality
(start - end)		750 (88 - 837)783 (82 - 864)
definitionCHROMAT_FILE: MSMg01no304_b08.b1 PHD_FILE: MSMg01no304_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:15 2005CHROMAT_FILE: MSMg01no304_b08.g1 PHD_FILE: MSMg01no304_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGGTTANNNNNNNGACACTGGGCGCTAAGACTCACTAAGGGAGAGG
ATCCGCGGAATTCTAAAGATAACCCTGACACTTTGGTTCTGGGGGAATAG
AGAGAGTGGAAAAGATCTACGTGCAGACTGCCTAGTCTTCTGGCAGGCAT
GGCCTTTGGTTGAGCAGGGCATGTCCACCTGAGTTGGGGACCTAGTAATA
TATTTCAGAGGGGGAGAAAGGAGTCGTGGGGGAAATTGTCTGTGAGATTC
CCAGGATGCACAGACAGTAGAGAATGGAGGCTGCAGCAATGCAGCTTTCA
GTCGGTTTGTGGAAAGCCACTTGGGCAACAGGCTGAGTTGTTTCAAGGTC
CTGTGGAGCCTCTTTGGCCAATGACTCGATTAGATTTAACCCTAAGAGGG
TACTGGAAGCTTTGTTTGGTGACAAAAGATGTCACCAGGATTAATTTCAC
ATATGTGTCTTATGTGTTTACAAACTTTCTACTGCATTTGTTTTCCATAT
TACCCCTCAAAAATGCTCCTTAATTTTATGTCTCCATGTTCCCATCAATA
TGGCCTCACTCTCTCTCTCTCTTTTTTTTTCTACTTAATAATCTCATTCT
AACTCCCTACCTTCCATTGATATCTAATATATTACCCTTCCCTAAGGATA
TTTGTTTCTTTTAATACCTTATTCTACACCAACCCTCCATATTGTATAGA
TTTTTCACTTGGTTATCATTGATGTAAGGATAAAATTCACATATAAGGAA
ATAAATGCCATTTGTGTCTTTCTAGTCTGAGATACCTCACTCAGGATAAT
TTTTTTTCTAGATGCATCAAAAAGCCTGTAAATTTCACAGAGGTTCAAAA
GTGTTATCGCTGGATTTTAAAGTATATCCATTTTTAGTTAGGAACTTTCC
CCCCCCAATTGATGAATGTTACCTCCCTCCCACACTTGACACCCTAAGCT
GGCGCTTTATTTTTACATCTAAACAACCCTGTCCTGTGTTAAGGGGAAAC
CCCTAACAACTTTGATTTCCTTTCTCGCAGCGGAAAGAACTTTATTCCTT
TTTTATTGGGGAATATGAATCTTGTTATTTAATTCTTTAAACATCCGGGA
TTTCCCTTAAACCCGGAACGAAGGGCGAAATATTTTCTTGTTGAAATCTG
AACTTCCAAAAATTTCTTTTTCTAACAAATTCTCCTGAATTAGCCCATTT
TTTTTCTTTTACAAAAAAATTGTCTAAANTTCCCTTTTGGCAAGAGAAAA
CTACACCTTCCAACCTCTCTCTTTGGCTGTACCTAGGAAATCT

NNCCCATTCTNNNNNNNTTATCAAGTGAGGCTGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATCTAATTATATATAA
CCCATATGGTTGTCTTAATGTACTTAATAGTTCATGTTGAATAGGTAAAA
GAACATTTATTGTTTTAAAATAAAGTTTACAGAAAATTCTTAAAAGTAAA
ATATAGGTTTATAATAATAGTGAATATTCTTATGCTTAATAAAACTTAAG
GAAGTTGCAAATATATAACAATAAGAATGAAAATTATTACATAAATAAGA
GCAAAATTATACAATAACTTTATTACAACCATTCTAATGTAGCTTATTAC
TTTTGTGTGCTTGTATTCATGTGTACTGTACATTGAGCCATGGGATGCAT
GGAGAGTTCAGAAGAAATATGACTTGTTGGTGCTCAGATCACATGTGGTA
TTGTCAATATCTTCTCAGTGTTCCTTCTGCCAATGAAAATGTCCCATGAA
CTTTGGGAAATACCTCTGTCTCCACATCCCACCTTTAGAAGAAGGATTGG
GAGACAGAAGTATCAGTTTCACTTTTGATTTCACACGAGCTTGAGGGTAC
TAATAGTGCCAGACACATCATTACCCATGTAGTTAGCTGTCTAGCCTTCA
CTATTGTCATTTATAGTAATCACTTGCTTCCCAGAACACCAAGTTATATA
GCATAGTGTGATGATTAGAAGAGTTGATCAATCATAACATCCATTTAAAA
TGGAGCAAGAATATATTTTATCATATAATAATAGCTATTGCGGTATACAG
TTATCTGACAACTGTGATGTCTATTAAAATTAATTTTTTAGTGGTATAAC
TATATTTTGTTTTTTAAATTAGGTATTTTCCTCATTTACATTTCCAATGC
TATCCCAAAAGTCTCCCATACCCTCCCCCCCCCACTCCCACTTTTTGGCC
CTGGCTTTCCACTGTACGGGGGCAAATAAAAGTTGCTAGGCCCAAGGGGG
CTCTCTTTCCTGTGAAGGGCCACTAGGCCCTATTTTTATACATTTTTCGC
TAAAGACAGAAATCCGGGGAACGGGTAGTTTAAATGGTTTTCCCCCTTAA
AGGGGGGGGAACCCTTTAATTCTTGGGGGATTTTTCAAATCCCCCCCCGG
GGACCCGGGACTTTCCCCAAATATATTGTGAGATCCCCTTATTTTTTTGT
TTTTCTTTTNCNCCCCCCCTAAAAAAATATTGGGTCCTTATCCAAAACTT
GTCTTGTTTTAGGGGGGGTTTTGTGGGGAATATAAAGAACTCCTATAGAC
CTGATAAGCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b08.g1 MSMg01no304_b08.g1 CHROMAT_FILE:
MSMg01no304_b08.g1 PHD_FILE: MSMg01no304_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:15 2005
         (783 letters)



>mm_chr14_108134021_108135203
          Length = 1183

 Score = 1466 bits (758), Expect = 0.0
 Identities = 773/778 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ctaattatatataacccatatggttgtcttaatgtacttaatagttcatgttgaataggt 65
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 206 ctaattatatataacccatatggttgtcttaatgtatttaatagttcatgttgaataggt 265

                                                                       
Query: 66  aaaagaacatttattgttttaaaataaagtttacagaaaattcttaaaagtaaaatatag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaagaacatttattgttttaaaataaagtttacagaaaattcttaaaagtaaaatatag 325

                                                                       
Query: 126 gtttataataatagtgaatattcttatgcttaataaaacttaaggaagttgcaaatatat 185
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtttgtaataatagtgaatattcttatgcttaataaaacttaaggaagttgcaaatatat 385

                                                                       
Query: 186 aacaataagaatgaaaattattacataaataagagcaaaattatacaataactttattac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacaataagaatgaaaattattacataaataagagcaaaattatacaataactttattac 445

                                                                       
Query: 246 aaccattctaatgtagcttattacttttgtgtgcttgtattcatgtgtactgtacattga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaccattctaatgtagcttattacttttgtgtgcttgtattcatgtgtactgtacattga 505

                                                                       
Query: 306 gccatgggatgcatggagagttcagaagaaatatgacttgttggtgctcagatcacatgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccatgggatgcatggagagttcagaagaaatatgacttgttggtgctcagatcacatgt 565

                                                                       
Query: 366 ggtattgtcaatatcttctcagtgttccttctgccaatgaaaatgtcccatgaactttgg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtattgtcaatatcttctcagtgttccttctgccaatgaaaatgtcccatgaactttgg 625

                                                                       
Query: 426 gaaatacctctgtctccacatcccacctttagaagaaggattgggagacagaagtatcag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaaatacctctgtctccacatcccacctttagaagaaggattgggagacagaagtatcag 685

                                                                       
Query: 486 tttcacttttgatttcacacgagcttgagggtactaatagtgccagacacatcattaccc 545
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttcacttttgatttcacaagagcttgagggtactaatagtgccagacacatcattaccc 745

                                                                       
Query: 546 atgtagttagctgtctagccttcactattgtcatttatagtaatcacttgcttcccagaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atgtagttagctgtctagccttcactattgtcatttatagtaatcacttgcttcccagaa 805

                                                                       
Query: 606 caccaagttatatagcatagtgtgatgattagaagagttgatcaatcataacatccattt 665
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 caccaagttatatagcaaagtgtgatgattagaagagttgatcaatcataacatccattt 865

                                                                       
Query: 666 aaaatggagcaagaatatattttatcatataataatagctattgcggtatacagttatct 725
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aaaatggagcaagaatatattttatcatataataatagctattgcggtatacagttatct 925

                                                                     
Query: 726 gacaactgtgatgtctattaaaattaattttttagtggtataactatattttgttttt 783
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gacaactttgatgtctattaaaattaattttttagtggtataactatattttgttttt 983


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 1183
Length adjustment: 10
Effective length of query: 773
Effective length of database: 1173
Effective search space:   906729
Effective search space used:   906729
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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