BAC Information

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BAC

Clone NameMSMg01-304B13
Chromosome14 (Build37)
Map Location 12,928,419 - 12,950,020
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304B13.T7 (MSMg01no304_b13.b1)MSMg01-304B13.TJ (MSMg01no304_b13.g1)
ACCAG429492AG429493
length1,2751,297
length of high quality
(start - end)		673 (89 - 761)703 (81 - 783)
definitionCHROMAT_FILE: MSMg01no304_b13.b1 PHD_FILE: MSMg01no304_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:16 2005CHROMAT_FILE: MSMg01no304_b13.g1 PHD_FILE: MSMg01no304_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:17 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(12,928,419 - 12,929,091)(12,949,475 - 12,950,020)
sequence
NNGGCAATAANNNNNNNGGCAGTGGGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCTAGACATACGCAGAGCCCTTCTGAAACAAAGTCTGTCA
CACTATTGTTGGCCAGGCCATCTGGAGCTCTCCTGTGAGATGTGTTTGCA
TCTCCTCCCTTTCCTAACATCCATGCCATGAGAAGCTCTCCAAAGCCTTA
TTTGGGGACATTATTAGAAGTGTGCTTCAGCAGGTAGGCTTCATCTCACA
AGATTATGATCTCATAGCTGGACTGGTTGAGAAAGCCTCCCTCAGAAAGC
CATATTGCACAAGTAGTCTGCTACCTCATACTAAAGTGTATACACAAAGT
CACTTAAAATACTTGTAAACAGGAGTTTTGTTTTTAATAGCTATTGATTA
AAAATACCGAATGTTCACCAGTGGGAGCATAGGTTCCAGCCATGATATAT
GAGACTGTAGCCTATTATATGCAGCAGTTAAAAAAAATGGCAGCCTACAA
CCTACTTGGAAGAACCCATACTTTGTGGTTCTATTTATGTTAAGTGCAAG
AATAAGCCAAATCAGTCCATGGTGCTACAAGCCAGAATGGCAGAATGAGG
TGACAGTGAAGCTCAGCCTTTCCTGGCTGTAAAGTGCTGTTTTAACCTAT
TTCTCTGGNTATGTTTAATAGCTTAGAAGTGAGAAATGATGTTATCACAC
GCAAAGTTCATACCTGAGAATCACTGATGGAGTTTACAAGAGCAAATTAC
CAAAACCCCACGCAGTGTTTGGAGTACATTTGTGACTTTGTGTTGGGACA
TATTCACACCTATGGTTGACCACACCTCACGGAGGGTGATGCCATAGTAT
ACTACAGTTTCCCTGGGTGGCCGTGCTGATTTGTAAATTCTCTGAAAAAT
AAAAAAAATCCCGGGTTTCAAAAACTAATTTCTTAAAAGGCCTATCTTCC
AACTTTTACAAACAAAAAATCTTTTACCTGGTAAAAAGTTAAACTTATAA
ATTGCCCAAAATTGAAATTGGTATAGGGCAAAATTATAAATGGGTTCGTT
TGTGAAAANTAAATACTACTTTGTTAAAATTGATAATCTTACATAAATAA
AAACTTTTTCCTAACATANTATAAAGTTATTATTTTTTTTCTTTACTATC
AATAAACCCTTTNATTTTTTATAAAAAACTTATTCAAACATTTTTTTTTA
TTTCTATACAATTCATTTTNACAATATNATCTTTTACTCTAAATTATTAC
TATAATAATCTATCNTCATCTTATA

NNCCCGGTTTNNNNNNNATGAGGCGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTGGTGGTTTGAATGA
GAATGGCCTCCATAGGCTCATATTTGAATGTTTGGTTTTCAGTTGGTGGA
CTGTTTGGGAAGGTTAGGAGGTGTGGCCTTGTTAGAGGAGTTGCATCATT
TGAGGTGAGCTTGGAGGTTTCACAAGCCAGCTCGAGGTCACTTCCTCAGA
CTTATGTTTAAAATGTAAGCCCTGTGCTATGCTTCAGCACCAGGCCTGTC
TGTCTGCTGCCATGCTCCCTCCCATGATGATCATAGACTAAGCCTCTAAA
ACTGCAGGCCCACAATTAAGTACTTTCTTTGTGTAAGTTGCCTTGGTCAT
GGCATCTCTCCACTGCAACAGGACAATAACTAAGACAAGCACTGACACCA
GCAGCTAAGACTTTCTAAGCTCTTATGATATGTAAAGGACCACACAAAAA
GGAGCAGGTGCTTGGTGACTTAGTCATCAGAGAGGCCCTGTGAGGTTGGG
AGTATGGTCATTGTTCACAGTCTGCCTGTGTGTTACTGAAACCAATAAGG
AAACTGGTCCTTGAGACATTACAACTGCCCCAAGGTCACAAAAGGTAAAG
TAAGGATTAGAAAGCCATGACTGAGTGACTCAGCTTCTCTCAACCATACA
TGTCACACTCAACAGGCCCATAGCACGATTCATCGAATGAGAAGCCAGTG
GTGGGGGTAGTACCAATACGTTCCCAGTAATTCCTGCTTACTAAGTCCAA
CGCCAATTCAGTCAGGGGACCCAACGTCATCTATCTGGCCTCTTTTGTGT
TCTGAAAGGAAACCACATAGGGCCAACTGGGTGGCATTGAACAGATGTCA
GCCCAAAAAGGGAATCCTCTGCACATTCCAAGCCCTCCCTTCTACTCACC
TGAACCTTTCCTTGGGGAGGGTTGGTTTTATCTACTTTAAGTAACTAAGG
AATCCTTTTCCTTTTATAAAAAAAATGAAAGTTTTTTTTTCTTAAAACAA
CTGACTTTTTATTTTTTTTGGAGTGGTTAATAATCTTTTTTTTTTCCTTC
TTTGGAAAATATTTTTTTTTTATATATATGTTACAAAAAATTTTTATTTT
TCTCTAATTTGTTTTGACGGCTTAATATTTCTCTTTCTTTTTCAATATTA
CTACATAATATTTTTATCCTCTCTTATCNACAATATAACATTTATTTTTN
ACCACTCTTTCTCTTTTATTATCTCATATTTATTCACATCTTACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_b13.b1 MSMg01no304_b13.b1 CHROMAT_FILE:
MSMg01no304_b13.b1 PHD_FILE: MSMg01no304_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:16 2005
         (673 letters)



>mm_chr14_12928219_12929291
          Length = 1073

 Score = 1272 bits (658), Expect = 0.0
 Identities = 669/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtctgtcacactattgttggccaggccatctggagctctcctgtgagatgtgtttg 60
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 201 caaagtctgtcacactattgttggccaggtcagctggagctctcctgtgagatgtgtttg 260

                                                                       
Query: 61  catctcctccctttcctaacatccatgccatgagaagctctccaaagccttatttgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctcctccctttcctaacatccatgccatgagaagctctccaaagccttatttgggga 320

                                                                       
Query: 121 cattattagaagtgtgcttcagcaggtaggcttcatctcacaagattatgatctcatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattattagaagtgtgcttcagcaggtaggcttcatctcacaagattatgatctcatagc 380

                                                                       
Query: 181 tggactggttgagaaagcctccctcagaaagccatattgcacaagtagtctgctacctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggactggttgagaaagcctccctcagaaagccatattgcacaagtagtctgctacctca 440

                                                                       
Query: 241 tactaaagtgtatacacaaagtcacttaaaatacttgtaaacaggagttttgtttttaat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctaaagtgtatacacaaagtcacttaaaatacttgtaaacaggagttttgtttttaat 500

                                                                       
Query: 301 agctattgattaaaaataccgaatgttcaccagtgggagcataggttccagccatgatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctattgattaaaaataccgaatgttcaccagtgggagcataggttccagccatgatat 560

                                                                       
Query: 361 atgagactgtagcctattatatgcagcagttaaaaaaaatggcagcctacaacctacttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagactgtagcctattatatgcagcagttaaaaaaaatggcagcctacaacctacttg 620

                                                                       
Query: 421 gaagaacccatactttgtggttctatttatgttaagtgcaagaataagccaaatcagtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagaacccatactttgtggttctatttatgttaagtgcaagaataagccaaatcagtcc 680

                                                                       
Query: 481 atggtgctacaagccagaatggcagaatgaggtgacagtgaagctcagcctttcctggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggtgctacaagccagaatggcagaatgaggtgacagtgaagctcagcctttcctggct 740

                                                                       
Query: 541 gtaaagtgctgttttaacctatttctctggntatgtttaatagcttagaagtgagaaatg 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 gtaaagtgctgttttaacctatttctctgggtatgtttaatagcttagaagtgagaaatg 800

                                                                       
Query: 601 atgttatcacacgcaaagttcatacctgagaatcactgatggagtttacaagagcaaatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgttatcacacgcaaagttcatacctgagaatcactgatggagtttacaagagcaaatt 860

                        
Query: 661 accaaaaccccac 673
           |||||||||||||
Sbjct: 861 accaaaaccccac 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no304_b13.g1 MSMg01no304_b13.g1 CHROMAT_FILE:
MSMg01no304_b13.g1 PHD_FILE: MSMg01no304_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:17 2005
         (703 letters)



>mm_chr14_12948918_12950020
          Length = 1103

 Score = 1048 bits (542), Expect = 0.0
 Identities = 545/546 (99%)
 Strand = Plus / Minus

                                                                        
Query: 158  tcacttcctcagacttatgtttaaaatgtaagccctgtgctatgcttcagcaccaggcct 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 tcacttcctcagacttatgtttaaaatgtaagccctgtgctatgcttcagcaccaggcct 1044

                                                                        
Query: 218  gtctgtctgctgccatgctccctcccatgatgatcatagactaagcctctaaaactgcag 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gtctgtctgctgccatgctccctcccatgatgatcatagactaagcctctaaaactgcag 984

                                                                        
Query: 278  gcccacaattaagtactttctttgtgtaagttgccttggtcatggcatctctccactgca 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  gcccacaattaagtactttctttgtgtaagttgccttggtcatggcatctctccactgca 924

                                                                        
Query: 338  acaggacaataactaagacaagcactgacaccagcagctaagactttctaagctcttatg 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  acaggacaataactaagacaagcactgacaccagcagctaagactttctaagctcttatg 864

                                                                        
Query: 398  atatgtaaaggaccacacaaaaaggagcaggtgcttggtgacttagtcatcagagaggcc 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  atatgtaaaggaccacacaaaaaggagcaggtgcttggtgacttagtcatcagagaggcc 804

                                                                        
Query: 458  ctgtgaggttgggagtatggtcattgttcacagtctgcctgtgtgttactgaaaccaata 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  ctgtgaggttgggagtatggtcattgttcacagtctgcctgtgtgttactgaaaccaata 744

                                                                        
Query: 518  aggaaactggtccttgagacattacaactgccccaaggtcacaaaaggtaaagtaaggat 577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  aggaaactggtccttgagacattacaactgccccaaggtcacaaaaggtaaagtaaggat 684

                                                                        
Query: 578  tagaaagccatgactgagtgactcagcttctctcaaccatacatgtcacactcaacaggc 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  tagaaagccatgactgagtgactcagcttctctcaaccatacatgtcacactcaacaggc 624

                                                                        
Query: 638  ccatagcacgattcatcgaatgagaagccagtggtgggggtagtaccaatacgttcccag 697
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  ccatagcacgattcatcaaatgagaagccagtggtgggggtagtaccaatacgttcccag 564

                  
Query: 698  taattc 703
            ||||||
Sbjct: 563  taattc 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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