Query= MSMg01no304_i24.b1 MSMg01no304_i24.b1 CHROMAT_FILE:
MSMg01no304_i24.b1 PHD_FILE: MSMg01no304_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:22 2005
(381 letters)
>mm_chr14_116901723_116902503
Length = 781
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%), Gaps = 4/311 (1%)
Strand = Plus / Minus
Query: 1 gtgccctgcctgtagtggaggcagcgaacactgccgggtcgagcttctgaagccctcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgccctgcctgtagtggaggcagcgaacactgccgggtcgagcttctgaagccctcttt 249
Query: 61 ggtgattctcctgtaccactgaaggtgactctgcctagttacacgcctgtctttggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggtgattctcctgtaccactgaaggtgactctgcctagttacacgcctgtctttggagga 189
Query: 121 ttccaggaagcaaattggattgggattctgagtccctcagtgattggtaggacttatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttccaggaagcaaattggattgggattctgagtccctcagtgattggtaggacttatcct 129
Query: 181 tctgtagtctgtgttatgtcccagtggtccatctgctttctagattccatttgtttttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tctgtagtctgtgttatgtcccagtggtccatctgctttctagattccatttgtttttac 69
Query: 241 tgatatctcctcttccgtttcttccgcattcagtaaatttgtttttt-ttttgtttgntt 299
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| ||
Sbjct: 68 tgatatctcctcttctgtttcttccgcattcagtaaatttgttttttgtttt-tttg-tt 11
Query: 300 atttttttttt 310
||||||||||
Sbjct: 10 -tttttttttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_i24.g1 MSMg01no304_i24.g1 CHROMAT_FILE:
MSMg01no304_i24.g1 PHD_FILE: MSMg01no304_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:22 2005
(747 letters)
>mm_chr14_116841098_116842246
Length = 1149
Score = 1288 bits (666), Expect = 0.0
Identities = 727/748 (97%), Gaps = 2/748 (0%)
Strand = Plus / Plus
Query: 2 gaggtttatagtgaatcctgccaaaggattttctggaatgtgggtttggatagtttaaat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaggtttatagtgaatcctgccaaaggattttctggaatgtgggtttggatagtttaaat 261
Query: 62 actgaacaatgaaattctaagtagctttagaaaattgagagaaaaattctggtatttatt 121
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 262 actgaacaatgaaattctaagtagctttggaaaattaagagaaaaattctggtatttatt 321
Query: 122 ggcttaattcgactagaaaattttaaaataaaacttacctctataaatttgcattttgaa 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcttaattcgactagaaaatttttaaataaaacttacctctataaatttgcattttgaa 381
Query: 182 gcaaatgaaaatgtttgctttagagctaaagaaagtaaagtgcctgtatttgtaatcaat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaaatgaaaatgtttgctttagagctaaagaaagtaaagtgcctgtatttgtaatcaat 441
Query: 242 ttaaatgttttaaatgtactgttgatttgaacagctgatcttttatgaactgcttagtgt 301
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 442 ttaaatgttttaaatgtactgttgatttgaacagctgatcaataataaactgcttagtgt 501
Query: 302 gcttatttcataattatgaat--aacaggtctcagtacctgacttcagcagcttccactc 359
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcttattccataattatgaatttaacaggtctcagtacctgacttcagcagcttccactg 561
Query: 360 acagcagctatgctcctgcctcaactcatgagtctactgagaacagagaagtttgtgtca 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 562 acagcagctatgctcctgcctcaactcatgagtctactgagcacagagaagtttgtgtca 621
Query: 420 ttgctttgcttactttttactttggaaatcccaaaaagtctctttagataaaaatttcct 479
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 622 ttgctttgcttaatttttactttggaaatcccaaaatgtctctttagataaaaatttcct 681
Query: 480 tcccatttccaaggtctgctttaattgaaggaagactgtaaaaatctttgctttagtgtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcccatttccaaggtctgctttaattgaaggaagactgtaaaaatctttgctttagtgtc 741
Query: 540 cttgcagtagccatccatcatggctatgtcctgttctcagctgacttccttcatttccca 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cttgcagtaaccatccatcatggctatgtcctgttctcagctgacttccttcatttccca 801
Query: 600 tatccgtgcgcacccatttacagtttcctcaaacgtttcttattctagttccttcctact 659
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 802 tatccgtgcgcacccatttacagtttcctcacacgtttcttattctagttccttcctact 861
Query: 660 ttcctgtctgttcactcactgtcatctgaaaagtgtgcagattctctaattttgcatttt 719
|||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 862 ttcctgcctgttcactcactgccatctgagaagtgtgcagattctctaattgtgcatttt 921
Query: 720 aagggctattacatcatatgatagttat 747
|||||||||||||||||||||||||||
Sbjct: 922 tagggctattacatcatatgatagttat 949
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1149
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1139
Effective search space: 839443
Effective search space used: 839443
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
