Query= MSMg01no304_j02.b1 MSMg01no304_j02.b1 CHROMAT_FILE:
MSMg01no304_j02.b1 PHD_FILE: MSMg01no304_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:23 2005
(748 letters)
>mm_chr14_81214643_81215790
Length = 1148
Score = 1363 bits (705), Expect = 0.0
Identities = 738/749 (98%), Gaps = 2/749 (0%)
Strand = Plus / Plus
Query: 1 taactatcaccggatctcaactaataattttcacgtatttgtgtgaatactctatttacc 60
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactatcactggatcgcaactaataattttcacgtatttgtgtgaatactctatttaca 260
Query: 61 tatgccgatcccacttccatctccaaattggaattttagaaatttgtagtattaaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgccgatcccacttccatctccaaattggaattttagaaatttgtagtattaaaattt 320
Query: 121 tctctagataattctgctattagcaatattttaagaagaaaataataaagtatttgtatc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctagataattctgctattaacaatattttaagaagaaaataataaagtatttgtatc 380
Query: 181 agctctcacatttagacgtctgtttatggctttatatttcatttttacttgcacattgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctctcacatttagacgtctgtttatggctttatatttcatttttacttgcacattgat 440
Query: 241 tttatgttgattatctaatttatttgcatcacttgatttctaggtatatcatcccttaca 300
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 441 tttatgttgattatctaatttatttgcatcacttgattacaaggtatatcatcccttaca 500
Query: 301 ttgattttcctctactgtgccatataagtagaagattaatttagttttgcgagcaatcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgattttcctctactgtgccatataagtagaagattaatttagttttgcgagcaatcat 560
Query: 361 aaaatccaactcatcaggactcaatatatatctatagttgcaagcaatgtgttctttcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatccaactcatcaggactcaatatatatctatagttgcaagcaatgtgttctttcac 620
Query: 421 aagccataaccagtgatcagcatttgctatttttatttccctagtaaaatacttttatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagccataaccagtgatcagcatttgctatttttatttccctagtaaaatacttttatta 680
Query: 481 tttaagaaactgaaatgagatctagataagtgcagctgaaccagatggagtgagcgattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttaagaaactgaaatgagatctagataagtgcagctgaaccagatggagtgagcgattt 740
Query: 541 agacttaagaacataagaaaattactacatgattcggatcaaaggtgtgtcctaattttc 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 agacttaagaacataagaaaattagtacatgattcggatcaaaggtgtgtcctaattttc 800
Query: 601 cttccttcctggggcatcagcgaagagacagattgtgtcggtagaggttcatcctgacac 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 cttccttcctggggcatcagcgaagagacagattgtgtcggtggaggttcatcctgacac 860
Query: 661 ggacctcttggtcagatcaaggctgactcctctttattaagtgtaccctagaaattaatt 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 ggacctcttggtcagatcaaggctgactcctctttattaagtgtaccctaaaaattaatt 920
Query: 721 ttcctatatattttttcaaa-ttctcttt 748
||||||||||||||| |||| ||||||||
Sbjct: 921 ttcctatatattttt-caaaattctcttt 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space: 839844
Effective search space used: 839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_j02.g1 MSMg01no304_j02.g1 CHROMAT_FILE:
MSMg01no304_j02.g1 PHD_FILE: MSMg01no304_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:23 2005
(823 letters)
>mm_chr14_81359409_81360631
Length = 1223
Score = 1514 bits (783), Expect = 0.0
Identities = 813/823 (98%)
Strand = Plus / Minus
Query: 1 agtcataaaaggacgtatagaagttactttgaatctttgcaggcaaaagccatgtatcct 60
|||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 1023 agtcataaaaggacatatagaagttagtctgattctttgcaggcaaaagccatgtatcct 964
Query: 61 tccagggatatgaactatccatctgtctcctttcacagggcagcaacaacatacaagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 tccagggatatgaactatccatctgtctcctttcacagggcagcaacaacatacaagcaa 904
Query: 121 acaaatatctgctgattgggtaacagacttggagataagaactgtatctgaaaacattag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 acaaatatctgctgattgggtaacagacttggagataagaactgtatctgaaaacattag 844
Query: 181 ttacattttctcattgatatcactatttattaatacattctgaattttttaagttagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttacattttctcattgatatcactatttattaatacattctgaattttttaagttagcat 784
Query: 241 ggtttacattccaattttagtgtaaaaatttccccaaaatataaagtaataattttcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ggtttacattccaattttagtgtaaaaatttccccaaaatataaagtaataattttcatt 724
Query: 301 gcctttggtttatttatctgattcttcctttatgcttacatataacatacatatagcata 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gcctttggtttacttatctgattcttcctttatgcttacatataacatacatatagcata 664
Query: 361 ctctatctgctgctcaaaaatttgtaaaacaaaggcgaattatacaatctgagaagccat 420
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct: 663 ctctatctgctgctcaaaaatttgtaaaacaaaggcaaattatacaatccgagaagctat 604
Query: 421 taccatgtacttactatgcaaggctgtacaatgcccagagccctaaagggaagggaattc 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taccacgtacttactatgcaaggctgtacaatgcccagagccctaaagggaagggaattc 544
Query: 481 tccatgcagagcaaatttttgttgctgctgatacatttctcaaatcaaaatcatttccat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tccatgcagagcaaatttttgttgctgctgatacatttctcaaatcaaaatcatttccat 484
Query: 541 ggcaacagaatgtgatatctaaaagacagtcactgtcttctaagacaagcagaaaataat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggcaacagaatgtgatatctaaaagacagtcactgtcttctaagacaagcagaaaataat 424
Query: 601 ttgtctgtaaattcagaagcttcttagtcaatcacaaatattgtcaataattagcaataa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttgtctgtaaattcagaagcttcttagtcaatcacaaatattgtcaataattagcaataa 364
Query: 661 cagcaagggaaattcaattacaggcagagcaatttgctttttatttaaatgttctctatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cagcaagggaaattcaattacaggcagagcaatttgctttttatttaaatgttctctatt 304
Query: 721 taatgcatcccagtgtgaaagtccctctgtaaattagaaaaagcacgtataacctcaatt 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 303 taatgcatcccagtgtgaaagtccctctgtaaattagaaaaagcatgtataacctcaatt 244
Query: 781 cctccattgaggtttgtagggaatatatgaagctgcagtcttt 823
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cctccattgaggtttgtagggaatatatgaagctgcagtcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 823
Length of database: 1223
Length adjustment: 10
Effective length of query: 813
Effective length of database: 1213
Effective search space: 986169
Effective search space used: 986169
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
