BAC Information

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BAC

Clone NameMSMg01-304J19
Chromosome14 (Build37)
Map Location 83,729,419 - 83,730,170
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304J19.T7 (MSMg01no304_j19.b1)MSMg01-304J19.TJ (MSMg01no304_j19.g1)
ACCAG429838AG429839
length1,3221,318
length of high quality
(start - end)		802 (91 - 892)851 (80 - 930)
definitionCHROMAT_FILE: MSMg01no304_j19.b1 PHD_FILE: MSMg01no304_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:29 2005CHROMAT_FILE: MSMg01no304_j19.g1 PHD_FILE: MSMg01no304_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGAGTTAAANNNNNNNACAATGGGCGCTAXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCCGAGGAATACTGCATGTAAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAACTATCAGGGAAAGGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTGAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ACTGTTGATGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTTAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTTCTGGGCATATATCAAGAAGATGTTCCAACTAGTAAGAAAGAAACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGACAAATGGATGGACCTGGAGGGCATCATCCTGAGCGAGGTAACC
CAATCACAAAGGATCTCACACAATATGTACTCACTGATAAGTGGATACTA
GCCCAAAACTTAGTATACCCAAGATATAAGATACAATTTGCCAAATGCAT
GAAACTCTAGAAGAATGAAGACCAAAGTGTGGACACTGTGCTCCTTCTTA
GAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGA
GCTGAGACAAAAGGATGGACCATCTAGAGACTGCCTTATCTAGGGATCCA
CCCCATAATCAGCTTCCAAACGCTGACACCACTGTATACACTAGCAAGAT
TTTGCTGAAAGGTCCCAGATATAGCTGTCTCTTGTGAGACTAGGCAGGGG
CCTAGCAAAACATAAGTGGATGCTCACAGCCAGCTATTGGATGGACACAG
GGCCCCCATGGAGGATTTAGAGAAAGTTCCCAGGAGCTAAGAAAACTGCC
ACCCCTTGGTGGCACACCTTTTGAATAACCGTACCCCGGAACCTTGATTT
GCTACAATGTATCAAAAAAGGCCCAACCGCCCTCCCCGGAAAAAAGGGCC
TTGCACCCAACTTTTTTTCCCCTACAGGGAAGCCGGGCCAAAAATAAATA
GGGGGTGGGGAAGGGGGGGGGNNNNNNNNNNNNNNNTNTNNNTNNNTNNT
NNNTTTTTTATNNNNNNTNNTTANTTNATAATTTTNNTATTNNTTTNNTT
TTTNNNATATATNNAATTATTT

NNCCCTTTTATNNNNNNNTTGCATGGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGTTATAACCATTTG
ATACTCACACAATTATTTAGCATATTTAGCAGTAATTATTGAAAAAGTAG
GACTTTTTACTTATTGATTTTGTTACAGCTAAAAGAATTTCATTCATTCT
ACTTTAAGATTTATTTTATGTATGAGTCGTCTATCTGCATGTACACCTAC
ATGCCAGAAGAGAGCATTACATCACACTATAGATGGTTGTGAGCCACCAT
GTGGTTGCTGGGGATTAAACTCAGGACCTCTGGAAAAAAAAAAGTGTTCT
CAACTGGTGAGCCATCTCTCCAGCCCCTCACTCCACTTTAGAAATCAGTA
TATGATCATGTATGGTCCATCCTCAGCTGTCAAATCCTAGGATAGTTACA
ATGAAGACACCATACTTGACTATATATTGTTTCATCATATTCATTTTTAA
TAACTTACATTACAAATTCTCTAATTAGGAAAGTGCCACCTTCTTCCTAA
CTTCTTAGTATCTTCCTAAATGTACATTTTGTTCTTTAGCCAATATGGAC
TTCCTAGACACCACTTAAGAACAAAGTATTCTGTGGCACTGTAGAGAACA
CTAAATCAAATTCAGTGCGTAAATCTCTGTCATACCAATTTTGTATATGA
CCATATATCCCCCCAAAATATTTTAGTCTATATTCTACTTAGAATTTCCC
CAGAACAAGGATTTTTTAAGATACCAATACAAGCAGTTAAATCACAACAA
ATAATTATAAAAACAAACCTCACATTACGCTCTGTAGAGCAACACTTTTA
TACTTCCCAGGTGAACTATTGCATACAAAAAACTTCTTAGAATTTACTAT
AATAAAGCACATCTTTATTTAACATAAAATATTTGGATCTTTTAATTTAT
ACATATATATTAAATGGAATTAATTTGAAATTATGGACAAATTTGTTGAC
CAATTTTAACATTTAAATTTTAATCCCCCAAAAAAAATTTGAAAGGAGAT
CTCTTTTAGAAAAAAAAAATTTGGGGGAAAACAAGTTTAAAAAAACCTTT
TTAAAAGTTTGGAATTTCCTTAACCCCCAGAAAAAAAAAATTTGTTAAAG
GCTCCTCCCCCTTCAAATTAGAAATTCGGTACCTAAGGGCCAAAAAAATA
GGCCCCAAAGGAATTTTTTTCCTGGTTCCCTTTATAAAGGGAAAAAAAAA
AGAAGGGCCCCTCGGTTTTAGAACCCTCGAGGCGCCTCCCCCCCAATTGG
GTCTTTTTAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_j19.g1 MSMg01no304_j19.g1 CHROMAT_FILE:
MSMg01no304_j19.g1 PHD_FILE: MSMg01no304_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:29 2005
         (851 letters)



>mm_chr14_83728921_83730170
          Length = 1250

 Score = 1396 bits (722), Expect = 0.0
 Identities = 746/754 (98%), Gaps = 2/754 (0%)
 Strand = Plus / Minus

                                                                        
Query: 98   agctaaaagaatttcattcattctactttaagatttattttatgtatgagtcgtctatct 157
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1250 agctaaaagaatttcattcattctactttaagatttattttatgtatgagtagtctatct 1191

                                                                        
Query: 158  gcatgtacacctacatgccagaagagagcattacatcacactatagatggttgtgagcca 217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 gcatgtacacctacatgccagaagagagcattacatcacactatagatggttgtgagcca 1131

                                                                        
Query: 218  ccatgtggttgctggggattaaactcaggacctctggaaaaaaaaaagtgttctcaactg 277
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1130 ccatgtggttgctggggattaaactcaggacctctgg-aaaaaaaaagtgttctcaactg 1072

                                                                        
Query: 278  gtgagccatctctccagcccctcactccactttagaaatcagtatatgatcatgtatggt 337
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1071 gtgagccatctctccagcccctcactccactttagaaatcagtttatgatcaagtatggt 1012

                                                                        
Query: 338  ccatcctcagctgtcaaatcctaggatagttacaatgaagacaccatacttgactatata 397
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1011 ccatcctcagctgtcaaatcctaggatagttacaatgaagacaccatgcttgactatata 952

                                                                        
Query: 398  ttgtttcatcatattcatttttaataacttacattacaaattctctaattaggaaagtgc 457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  ttgtttcatcatattcatttttaataacttacattacaaattctctaattaggaaagtgc 892

                                                                        
Query: 458  caccttcttcctaacttcttagtatcttcctaaatgtacattttgttctttagccaatat 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  caccttcttcctaacttcttagtatcttcctaaatgtacattttgttctttagccaatat 832

                                                                        
Query: 518  ggacttcctagacaccacttaagaacaaagtattctgtggcactgtagagaacactaaat 577
            ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 831  ggacttcctagacaccacttaagaagaaagtattctgtggctctgtagagaacactaaat 772

                                                                        
Query: 578  caaattcagtgcgtaaatctctgtcataccaattttgtatatgaccatatatccccccaa 637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  caaattcagtgcgtaaatctctgtcataccaattttgtatatgaccatatatccccccaa 712

                                                                        
Query: 638  aatattttagtctatattctacttagaatttccccagaacaaggattttttaagatacca 697
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  aatattttagtctatattctacttagaatttccccagaacaaggattttttaagatacca 652

                                                                        
Query: 698  atacaagcagttaaatcacaacaaataattataaaaacaaacctcacattacgctctgta 757
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  atacaagcagttaaatcacaacaaataattataaaaacaaacctcacattacgctctgta 592

                                                                        
Query: 758  gagcaacacttttatacttcccaggtgaactattgcatacaaaaaacttcttagaattta 817
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  gagcaacacttttatacttcccaggtgaactattgcatacaaaaaacttcttagaattta 532

                                              
Query: 818  ctataataaagcacatctttatttaacataaaat 851
            ||||||||||||||||||||| ||||||||||||
Sbjct: 531  ctataataaagcacatcttta-ttaacataaaat 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 851
Length of database: 1250
Length adjustment: 10
Effective length of query: 841
Effective length of database: 1240
Effective search space:  1042840
Effective search space used:  1042840
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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