BAC Information

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BAC

Clone NameMSMg01-304L06
Chromosome14 (Build37)
Map Location 97,267,866 - 97,268,607
singlet/doubletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1, LOC100043366
Downstream geneLOC668654, EG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304L06.T7 (MSMg01no304_l06.b1)MSMg01-304L06.TJ (MSMg01no304_l06.g1)
ACCAG429902AG429903
length1,3241,329
length of high quality
(start - end)		742 (89 - 830)730 (95 - 824)
definitionCHROMAT_FILE: MSMg01no304_l06.b1 PHD_FILE: MSMg01no304_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:42 2005CHROMAT_FILE: MSMg01no304_l06.g1 PHD_FILE: MSMg01no304_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATTTTNNNNNNNGTCACTGGGCGCTATAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCAGCAAGGTCTGAAATACCTTTACCAATCCATCAAACAT
ACTGTAAATTTAGTGCAAATCATTAGATCTGTGAGGCTAAATGGCCTAAG
GTAGAACCTTCTGTTGTTATTTATTTATTTGGCTCCCTAAATTTTGTTTA
TTCTCATAGATCTGAGCTTCTCACAGAATGTCCCCTCCTCTTCCCCCTTC
CTCCCTCTCCTTCTCCCTCTCCCTCTCTCTCTCTCTCTACACACACACAC
ACACACACACACACACATAAATGCAGTCTACTTCGTACTTAGTATATCTT
ATTTGTATTTATACATTTTCAGGGCTGACCACTTGGTATTGGATCACCAA
TTATTATGCTTTTCTCTAGAGAATACTATTTCTTCTGCTCTCAGAAACCC
TTACAGTTTTTGTGTAGATTTCAAATCTCATGAGCATTCCCTGTCCATGT
TAATGTGTCCAGTGGAGTCATTGCTGTTCAGGTCATATCTAGGCAGCCAT
GTTAGTGAAATATCATAGATGTAGCTTTGAATATTTCTAGGATGTGTAAA
GTCCTCTTTCCTCTAGCCTCCTCAAGGAAGCTCCCATTGTAAAGCATGGA
GATTGTTACAGATCAATACTACTGATCAAAGTACAGTGTTTTTGAGGCCA
GTCCCAGCTGATATCTACAATAAAACTCTTTGCATGTAAATTTCTGATCT
TTTCAGAAAAGACTCTGGAATGATTCTAAGAGCCATGCTATCCAAAATGA
TGCATTTTGTTTTGATTCCTCCCTCTCAGAAACAAAGGGGAGGGGAGATG
AGGCGAAGAACTATTGGAGTGGGACCAGGAAGGGGAAAACATTTGAAACA
ATTTAAAAAATAATAAACATCCTCCATCTTCCCTCTTCAGAACCTGATGA
AACATTACACTTGTCTGCCTTGGGGGGTTTTACTTTGAAATTCTGCCAAA
CCCTAGTTTTGAAGCTCCTTTTGTGCCAACCCTATTTTTTTTAAATTAAA
AGCCCAAAAAACCCCTGTAAGGCACCCTGTTTCTTCGTGTTGTTTACCGA
AAGAAATCCCCACAAAAAAATTTTAAACTTTTGTTTCCCCAAGGGTTCCT
GAAAAAAATATATTAATAAAATAACATCCCTTTCCAGCCTTAAAATTCAA
AAAAGTACCCTTTTTCTTTTTTTCTCTCCCCCCCACACAAATTTAATATA
AAAGGAGTTTTATTGGTAATTCTTTTCTTGTCTTCTTTTCTTTCTAAATA
AACTCGAAGAACCTCGACGGCTCC

NCCGATTCATNNNNNNNACTGACGTGAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCACCTGACGAATACC
GAATGGCAGAGAAGCACTTGACCATATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATACAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTCGTACAACCA
CTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTC
ACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGAT
ATAATTTGCTAACCACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGG
ACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTT
ACAGAGACGGAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACT
GCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCAT
TGCATACACTAACAAGATTTTATTGAAAGGACGCAGATGTAGCTGTCTCT
TGTGAGACTATGCCCGGGGCCCAGCAAACACAGAAGTGGATGCTCACAGC
CCGCCTAATGGATGGATCATAGGGCTCCCCATGGAGGAGCTATAAAAAGT
ATCCCAGGAGCTAAAGGGATTGCCACCCCCTATTGTGGAACACCTTTTTG
AGATTACCCGTCCCCCGAACCTTGTATTCTACTGCTAAAAATTAAAAAAA
GGCCTAACCCCCCTTCCTTGAAAAAGAGACCCTGGACTTTCAACTTTTTT
TCCCCCCCAGGGAAACCCACGCCCAAAAATTCCCGCCCCCCCCGAATGAT
ATTTTTTNTNNTTTNNTTTATATTTTATTATTAATACTATCGAATTTATT
ATATTATTTTATTATATATATAATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_l06.b1 MSMg01no304_l06.b1 CHROMAT_FILE:
MSMg01no304_l06.b1 PHD_FILE: MSMg01no304_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:42 2005
         (742 letters)



>mm_chr14_97267666_97268807
          Length = 1142

 Score = 1419 bits (734), Expect = 0.0
 Identities = 740/742 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatcaaacatactgtaaatttagtgcaaatcattagatctgtgaggctaaatggccta 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 201 tccatcaaacatactgtaaatttagtgcaaatcacaagatctgtgaggctaaatggccta 260

                                                                       
Query: 61  aggtagaaccttctgttgttatttatttatttggctccctaaattttgtttattctcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtagaaccttctgttgttatttatttatttggctccctaaattttgtttattctcata 320

                                                                       
Query: 121 gatctgagcttctcacagaatgtcccctcctcttcccccttcctccctctccttctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatctgagcttctcacagaatgtcccctcctcttcccccttcctccctctccttctccct 380

                                                                       
Query: 181 ctccctctctctctctctctacacacacacacacacacacacacacacataaatgcagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccctctctctctctctctacacacacacacacacacacacacacacataaatgcagtc 440

                                                                       
Query: 241 tacttcgtacttagtatatcttatttgtatttatacattttcagggctgaccacttggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttcgtacttagtatatcttatttgtatttatacattttcagggctgaccacttggta 500

                                                                       
Query: 301 ttggatcaccaattattatgcttttctctagagaatactatttcttctgctctcagaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggatcaccaattattatgcttttctctagagaatactatttcttctgctctcagaaac 560

                                                                       
Query: 361 ccttacagtttttgtgtagatttcaaatctcatgagcattccctgtccatgttaatgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttacagtttttgtgtagatttcaaatctcatgagcattccctgtccatgttaatgtgt 620

                                                                       
Query: 421 ccagtggagtcattgctgttcaggtcatatctaggcagccatgttagtgaaatatcatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagtggagtcattgctgttcaggtcatatctaggcagccatgttagtgaaatatcatag 680

                                                                       
Query: 481 atgtagctttgaatatttctaggatgtgtaaagtcctctttcctctagcctcctcaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtagctttgaatatttctaggatgtgtaaagtcctctttcctctagcctcctcaagga 740

                                                                       
Query: 541 agctcccattgtaaagcatggagattgttacagatcaatactactgatcaaagtacagtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctcccattgtaaagcatggagattgttacagatcaatactactgatcaaagtacagtg 800

                                                                       
Query: 601 tttttgaggccagtcccagctgatatctacaataaaactctttgcatgtaaatttctgat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttttgaggccagtcccagctgatatctacaataaaactctttgcatgtaaatttctgat 860

                                                                       
Query: 661 cttttcagaaaagactctggaatgattctaagagccatgctatccaaaatgatgcatttt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cttttcagaaaagactctggaatgattctaagagccatgctatccaaaatgatgcatttt 920

                                 
Query: 721 gttttgattcctccctctcaga 742
           ||||||||||||||||||||||
Sbjct: 921 gttttgattcctccctctcaga 942


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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