Query= MSMg01no305_f20.b1 MSMg01no305_f20.b1 CHROMAT_FILE:
MSMg01no305_f20.b1 PHD_FILE: MSMg01no305_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:12 2005
(394 letters)
>mm_chr14_85755267_85756060
Length = 794
Score = 716 bits (370), Expect = 0.0
Identities = 388/394 (98%)
Strand = Plus / Minus
Query: 1 gcagatgctgctgatgctcatttcctttgcggtttccttagacagtgccagacatgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcagatgctgctgatgctcatttcctttgcggtttccttagacagtgccagacatgataa 535
Query: 61 gatacttaggatggaccatctgaacaaggagttacatatgtgaatggaaagataagaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gatacttaggatggaccatctgaacaaggagttacatatgtgaatggaaagataagaagg 475
Query: 121 ataatgataaagataatggttttcagaaccctaggaactgaattgtcctgtgttcatgac 180
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 474 ataatgatgaagataatggttttcagaaccctgggaactgaattgtcctgtgttcatgac 415
Query: 181 ttaacttgatccttatgtaaaatgcgaataaggttctctgccttaaaagctttatttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 414 ttaacttgatccttatgtaaaatgcgaataaggttctctgccttaaaagctttatctgta 355
Query: 241 ggctgtttagtttagtagtaccatctttgaaaagagagtattttttttatttcagtaaaa 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggctgtttagtttagtagtactgtctttgaaaagagagtattttttttatttcagtaaaa 295
Query: 301 ctcactttattaataaggctgtgatgcacagacatgtacggtttcttcctgttgtttgga 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctcactttactaataaggctgtgatgcacagacatgtacggtttcttcctgttgtttgga 235
Query: 361 atttttaagactattaattttcagttcacttcat 394
||||||||||||||||||||||||||||||||||
Sbjct: 234 atttttaagactattaattttcagttcacttcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_f20.g1 MSMg01no305_f20.g1 CHROMAT_FILE:
MSMg01no305_f20.g1 PHD_FILE: MSMg01no305_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:12 2005
(747 letters)
>mm_chr14_85573193_85574339
Length = 1147
Score = 1261 bits (652), Expect = 0.0
Identities = 721/748 (96%), Gaps = 11/748 (1%)
Strand = Plus / Plus
Query: 1 agagaattctcaacagaggtatatagaatggccatgaagcaattaaagaaatgctcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 210 agagaattctcaacagaggtatatagaatggccatgaagcaattaaagaaatgatcaaca 269
Query: 61 tccttagtcatcaggtaaataaaaacaataccaccctgagattccaccttacaccaatca 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tccttagtcatcaggtaaatgaaaacaataccaccctgagattccaccttacaccaatca 329
Query: 121 gaatggctaagataaaaaactcaagtgacagcacgtgctggcaaggatgtggagaaagga 180
||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 330 gaatggctaagataaaaaa--caa-----a--acgtgctggcaaggatgtggagaaagga 380
Query: 181 gaacattcctctattgatggtgggatttcaaactgctatgcccactctacacatcaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacattcctctattgatggtgggatttcaaactgctatgcccactctacacatcaatct 440
Query: 241 ggcagttcctcagaaaactggtagattgtacctatctctccctctctcagtgccaccatc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 441 ggcagttcctcagaaaactggtagattgtacctacctctccctctctcagtgccaccgtc 500
Query: 301 ctatcccaaccttcctcttctcttcatattgtccc-gcccacaaactcagagagaaagcc 359
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 501 ctatcccaaccttcctcatctcttcatattgtcccagcc-acaaactcagagagaaagcc 559
Query: 360 cttgattgaccagaggccaaatcatctgcttctgagaagtactcctgtgaatttacccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgattgaccagaggccaaatcatctgcttctgagaagtactcctgtgaatttacccaa 619
Query: 420 aagatgttccaacataccacaaggacaagtgtggcattgtattcatatcaaccttacttg 479
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 620 aagatgttccatcataccacaaggacaagtgtggcattgtattcatagcagccttacttg 679
Query: 480 taatagccagaaactggaaacaacccaaatgtccctcaactgaagaatggatatagaaaa 539
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 taacagctagaaactggaaacaacccaaatgcccctcaactgaagaatggatatagaaaa 739
Query: 540 atgtagtccatttacacaatgcaatactaatcagctgctaaaaacaaggacattgggctg 599
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct: 740 atgtagtccatttacacaatgcaatactaatcagctgttaaaaacgaggacattggcctg 799
Query: 600 gagagatgcctcagtggttaagagcaccatctgcccttccaaaaggccctgagttcaatt 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 800 gagagatgcctcagtggttaagagcaccatctgcccttccaaaaggtcctgagttcaatt 859
Query: 660 cctaacaaccacatggtggctcacaaccatgtgtaatgagatctgatgccctcctctggt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 cctaacaaccacatggtggctcacaaccatgtgtaatgagatctgatgccctcctctggt 919
Query: 720 gtttctgaagacagtgacagtgtactca 747
|| |||||||||||||||||||||||||
Sbjct: 920 gtgtctgaagacagtgacagtgtactca 947
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1147
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1137
Effective search space: 837969
Effective search space used: 837969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
