BAC Information

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BAC

Clone NameMSMg01-306A22
Chromosome14 (Build37)
Map Location 94,959,483 - 94,959,849
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306A22.T7 (MSMg01no306_a22.b1)MSMg01-306A22.TJ (MSMg01no306_a22.g1)
ACCAG430831AG430832
length755751
length of high quality
(start - end)
368 (388 - 755)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no306_a22.b1 PHD_FILE: MSMg01no306_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:43 2005CHROMAT_FILE: MSMg01no306_a22.g1 PHD_FILE: MSMg01no306_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGCTGCGTACCCCATTTTTAAATAGTGTTATTTGC
TTCTCTGGTGTCAAACTTCTTGAGTTCCCCGTATATATTGGATATCAGCC
TTCTTTGGGATGTAGGATTGATAAAAATCTTTTCCCATTCTATTGGTTGC
CGTTTTGTCCAATTGACAGTGTCCTTTGCCTTACAAAGTCTTTGCGGTTT
TATGAGGTCCCATTTATCTATTGTTGATCTTATTTCTAACCTCCTACTCT
AGTACCATCTTTACCTACTTACTGCAGTGTTTCCCATCATGATGATTATG
GATTAAACTGTTAGCTAGCCTTTTGTAAATGCTCTTCTTTGTAAGAGGTG
CTTCAGTCATGGTTTCTCTTCTTTGTAATAAAACCCTAACTCAGTAACCT
TCTTAAAATTTTAAAGCTGAAGTTCCATCCTGAAAAATATTGTGTTGCCT
TCCCACTTCTAACAAATTACTAAGATTATATGCAGAGGAGGTCTTACAGT
GAAGGTTCTTTATGTCAGTATGCTTTTTTTAGGAGAATAAGAGACCCAAT
TTTTTAGGAGAATAAGAGACCCAATTTCTCTAAAATCAGGCAACAGACCT
CTCTACATTGTACTCACATCTGAATTTACTTTCCTTACAAACCAAACAGA
AGACCAACTATTCTATAGTTACATAGAAATGTAAAAAGCTAAACTTTTCT
TTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCCTTCTTCCATCTTTACTTTCCTGC
TTAGATGTCTTAAAGTCTTATGATACAAGTTTTTAACTTGCTAAATCAGA
GCTACCCCATGATATTTTGTAGTTTTTGAGCCTATTGTGGTTTTGTATGT
ATTCTTTCTCAGTATATTTGTATACAGGAAGGCTATTAAAATTTTTGTTT
GTTAGTATTTTATCCTACTACTATTTTGAAAATATTTATGAGATGTAGGA
ACTTCGTGGTATAATTTTAAGGTCACTTTTCTATAATACTGTATCATCTT
CAATTAAGATACTGTTTTTTCTTCCTCCCCACCCTTTATCCATTTGATTT
CTTCACATTTCCTGTCGTTCCTTAAAGTACTAAAATAATTAGGTGTGTAA
AGTAAAGAGCACACAACCTTATTTTACTTCTAATTTTAGATAAAATGCTT
TGGGTTTCTCCTCATTAAAGTTGATTTTGGCAATGGGTTTTCTATAAATT
GCTTTTAGCATACTGAGACATTTCTCTTGTATCCTATTCTCCAGGACTTT
TATCATGGAGGGGAGTTGGATTTTTTTCAAAGGCCTTTTCTGCATCAAGT
AAAATGATCATGGTTATATTCTTGTTGAATATATAGTACCATTATCTACT
ATAATATCCTATACATATAANATTTAATAATTATCATGAGGCCTAAAGAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_a22.b1 MSMg01no306_a22.b1 CHROMAT_FILE:
MSMg01no306_a22.b1 PHD_FILE: MSMg01no306_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:43 2005
         (368 letters)



>mm_chr14_94959283_94960050
          Length = 768

 Score =  710 bits (367), Expect = 0.0
 Identities = 367/367 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtaagaggtgcttcagtcatggtttctcttctttgtaataaaaccctaactcagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtaagaggtgcttcagtcatggtttctcttctttgtaataaaaccctaactcagtaa 260

                                                                       
Query: 61  ccttcttaaaattttaaagctgaagttccatcctgaaaaatattgtgttgccttcccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcttaaaattttaaagctgaagttccatcctgaaaaatattgtgttgccttcccact 320

                                                                       
Query: 121 tctaacaaattactaagattatatgcagaggaggtcttacagtgaaggttctttatgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaacaaattactaagattatatgcagaggaggtcttacagtgaaggttctttatgtca 380

                                                                       
Query: 181 gtatgctttttttaggagaataagagacccaattttttaggagaataagagacccaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatgctttttttaggagaataagagacccaattttttaggagaataagagacccaattt 440

                                                                       
Query: 241 ctctaaaatcaggcaacagacctctctacattgtactcacatctgaatttactttcctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctaaaatcaggcaacagacctctctacattgtactcacatctgaatttactttcctta 500

                                                                       
Query: 301 caaaccaaacagaagaccaactattctatagttacatagaaatgtaaaaagctaaacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaccaaacagaagaccaactattctatagttacatagaaatgtaaaaagctaaacttt 560

                  
Query: 361 tctttct 367
           |||||||
Sbjct: 561 tctttct 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)