BAC Information

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BAC

Clone NameMSMg01-306H19
Chromosome14 (Build37)
Map Location 49,771,104 - 49,924,068
singlet/doubletdoublet
Overlap geneNat12, 1700011H14Rik, Slc35f4
Upstream genePeli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306H19.T7 (MSMg01no306_h19.b1)MSMg01-306H19.TJ (MSMg01no306_h19.g1)
ACCAG431135AG431136
length737737
length of high quality
(start - end)		549 (73 - 621)612 (75 - 686)
definitionCHROMAT_FILE: MSMg01no306_h19.b1 PHD_FILE: MSMg01no306_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:17 2005CHROMAT_FILE: MSMg01no306_h19.g1 PHD_FILE: MSMg01no306_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,923,520 - 49,924,068)(49,771,104 - 49,771,715)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTNTGTTCCCGCAAAAAGATTCTCAAGAGTTTCTCTCTTTTC
CAGGTTCTGTTTAAGATGTTTCTGGCCAGTGCCAACTTCGGTGAAGCTGC
ACACTTTGTCTCCACCTTGGGGTTCTTCAATTTGATCTTTATCTCCTTCA
CTCCCATCATCCTGTATTTCACCAAAGTGGAGCACTGGTCCTCCTTCGCA
GCGCTGCCCTGGGGCTGCCTCTGTGGGATGGCGGGACTATGGCTAGGTAA
GTGCCTGCCACTCTCCATGTCACTTGATCTTCCACTTGAACAGATGGTTA
TAGTGCGATGACTTCACTTGCTGCTCTTGTGCTCCACAGATCCAGACTAC
ATTGGTTATGGTCACTGAATGTGTGGACGATTCTTGGTAGGCTCTTGCGT
GATTATCTCAGAGCTATCCATCACAGAGTGGCTGCTGTGAATTAAAGTAT
CCAGTTAGAAACTCAGGTCACTCTGTCAAAACACTGGCCTTTAGGTAGCC
TCATCTAGTCTTCATAATGTGGTGTGTGACTTATTACTCTTCCTATGCGC
ATAGTATGACAGGCAGAAGTAATAATGGCCGATGCATTCAAATGCTCAAA
GTAGCTAGAGCACTGAGATCAGCTGAGATGGACATGAAGCAAAGAAGTGA
AGAGGAGCCAAGGGGACAGGAGGTAAGGGAACAAATN

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTACATGGACATCAATGCTAAATTT
CCTTGTAAATTTACTCTTTTATAAGTTAATAGAAGGACAACACATAGTAA
TTAGACTGTATACATTTTCTATTGAAAAGCTCACAGTTGATTAAAAATAT
TGACGTATTTTTCACCTTATGCAAACATTTTATTGCTGTGCAAGATTGCC
CTCTTGTGTTTTCTCTAGTCAAATTGTAATCACTTTTATTAATTTAGCTT
TCTTTCTAACTTTCCTAACTAAAATTAACTTGCTCCTAAATGAACTTTAT
ACTAAACAATAAAGAATGACACAGATCAGTGTTAAGACTTGTTAAATGAG
GTTAAACCCCTAACTAGCATCATTTATAAACACTACGGTCTAATAATAAA
GAGAACCAGAACCAAGTAGAAATAGTCACATTTTATCCCCCAAATAATTT
CATTTTCAATGTTTTCTAGCTAAAGCAGGTACTCCTATGTTGCCAGTAGA
AATGTAAATTTGGTGCACATGCATGCATACACGTGCACTCACATGCATAC
GCACATGTAAACACACATGCACACATGTGTGCATGCACATGGATGCACAT
ACCCAGACTTTTTGTGGGACAGACATCCGCCCTTTGTCTAGGAAAGTATT
CTTCCACTGAGTTACCTTTTGAGACAGGGTCTTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_h19.b1 MSMg01no306_h19.b1 CHROMAT_FILE:
MSMg01no306_h19.b1 PHD_FILE: MSMg01no306_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:17 2005
         (549 letters)



>mm_chr14_49923320_49924268
          Length = 949

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagattctcaagagtttctctcttttccaggttctgtttaagatgtttctggccagtgc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 749 aaagattctcaagagtttctctcctttccaggttctgtttaagatgtttctgggcagtgc 690

                                                                       
Query: 61  caacttcggtgaagctgcacactttgtctccaccttggggttcttcaatttgatctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caacttcggtgaagctgcacactttgtctccaccttggggttcttcaatttgatctttat 630

                                                                       
Query: 121 ctccttcactcccatcatcctgtatttcaccaaagtggagcactggtcctccttcgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctccttcactcccatcatcctgtatttcaccaaagtggagcactggtcctccttcgcagc 570

                                                                       
Query: 181 gctgccctggggctgcctctgtgggatggcgggactatggctaggtaagtgcctgccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gctgccctggggctgcctctgtgggatggcgggactatggctaggtaagtgcctgccact 510

                                                                       
Query: 241 ctccatgtcacttgatcttccacttgaacagatggttatagtgcgatgacttcacttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctccatgtcacttgatcttccacttgaacagatggttatagtgcgatgacttcacttgct 450

                                                                       
Query: 301 gctcttgtgctccacagatccagactacattggttatggtcactgaatgtgtggacgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gctcttgtgctccacagatccagactacattggttatggtcactgaatgtgtggacgatt 390

                                                                       
Query: 361 cttggtaggctcttgcgtgattatctcagagctatccatcacagagtggctgctgtgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttggtaggctcttgcgtgattatctcagagctatccatcacagagtggctgctgtgaat 330

                                                                       
Query: 421 taaagtatccagttagaaactcaggtcactctgtcaaaacactggcctttaggtagcctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaagtatccagttagaaactcaggtcactctgtcaaaacactggcctttaggtagcctc 270

                                                                       
Query: 481 atctagtcttcataatgtggtgtgtgacttattactcttcctatgcgcatagtatgacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atctagtcttcataatgtggtgtgtgacttattactcttcctatgcgcatagtatgacag 210

                    
Query: 541 gcagaagta 549
           |||||||||
Sbjct: 209 gcagaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_h19.g1 MSMg01no306_h19.g1 CHROMAT_FILE:
MSMg01no306_h19.g1 PHD_FILE: MSMg01no306_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:17 2005
         (612 letters)



>mm_chr14_49770904_49771915
          Length = 1012

 Score = 1183 bits (612), Expect = 0.0
 Identities = 612/612 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacatggacatcaatgctaaatttccttgtaaatttactcttttataagttaatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacatggacatcaatgctaaatttccttgtaaatttactcttttataagttaatagaa 260

                                                                       
Query: 61  ggacaacacatagtaattagactgtatacattttctattgaaaagctcacagttgattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacaacacatagtaattagactgtatacattttctattgaaaagctcacagttgattaa 320

                                                                       
Query: 121 aaatattgacgtatttttcaccttatgcaaacattttattgctgtgcaagattgccctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatattgacgtatttttcaccttatgcaaacattttattgctgtgcaagattgccctct 380

                                                                       
Query: 181 tgtgttttctctagtcaaattgtaatcacttttattaatttagctttctttctaactttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgttttctctagtcaaattgtaatcacttttattaatttagctttctttctaactttc 440

                                                                       
Query: 241 ctaactaaaattaacttgctcctaaatgaactttatactaaacaataaagaatgacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaactaaaattaacttgctcctaaatgaactttatactaaacaataaagaatgacacag 500

                                                                       
Query: 301 atcagtgttaagacttgttaaatgaggttaaacccctaactagcatcatttataaacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagtgttaagacttgttaaatgaggttaaacccctaactagcatcatttataaacact 560

                                                                       
Query: 361 acggtctaataataaagagaaccagaaccaagtagaaatagtcacattttatcccccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acggtctaataataaagagaaccagaaccaagtagaaatagtcacattttatcccccaaa 620

                                                                       
Query: 421 taatttcattttcaatgttttctagctaaagcaggtactcctatgttgccagtagaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatttcattttcaatgttttctagctaaagcaggtactcctatgttgccagtagaaatg 680

                                                                       
Query: 481 taaatttggtgcacatgcatgcatacacgtgcactcacatgcatacgcacatgtaaacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatttggtgcacatgcatgcatacacgtgcactcacatgcatacgcacatgtaaacac 740

                                                                       
Query: 541 acatgcacacatgtgtgcatgcacatggatgcacatacccagactttttgtgggacagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acatgcacacatgtgtgcatgcacatggatgcacatacccagactttttgtgggacagac 800

                       
Query: 601 atccgccctttg 612
           ||||||||||||
Sbjct: 801 atccgccctttg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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