Query= MSMg01no308_i21.b1 MSMg01no308_i21.b1 CHROMAT_FILE:
MSMg01no308_i21.b1 PHD_FILE: MSMg01no308_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:54 2005
(617 letters)
>mm_chr14_109274943_109275959
Length = 1017
Score = 878 bits (454), Expect = 0.0
Identities = 508/534 (95%), Gaps = 18/534 (3%)
Strand = Plus / Minus
Query: 1 taaattaatcctttacacagaaaaggagcttagcttagtccccaagttatctatgcagca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 528 taaattaatcctttacacagtaaaggagcttagcttagtccccaagttatctatgcagca 469
Query: 61 ttggtttgtcttcgcaccatactacccggtctactctttgatttactaccgagtctacgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttggtttgtcttcgcaccatactacccggtctactctttgatttactaccgagtctacgc 409
Query: 121 tttgctttactcgtagcatctgtggtcactcaatagggtgaaaactatgagaacatttct 180
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tttgatttacttgtagcatctgtggtcactcaatagggtgaaaactatgagaacatttct 349
Query: 181 agggccacttatatctcagcctgttactaaagtacacaaaatttagcattatttctactt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agggccatttatatctcagcctgttactaaagtacacaaaatttagcattatttctactt 289
Query: 241 ttctcataaactctcattgtattttcaccaccgagtaactttactaacaatgaaatagtt 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 288 ttctcataaactctcattgtattttcaccaccgagtagctttactaacaatgaaatagtt 229
Query: 301 taagagtttggatg-------aaaaaaaaaaaaaagaattgcacatcaactct----gcc 349
|||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 228 taagagtttggatgaaaaaaaaaaaaaaaaaaaaagaattgcacatcaactctggtag-- 171
Query: 350 ccatgatttgtaaattatttctacttgaaatcttgatattttagataattattttttttt 409
||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 170 --atgatttgtaagttatttctacttgaaatcttgatattttagataatta-tttatttt 114
Query: 410 attttcaaggtaatgactgaaaataagatac-agattagtgactacttagttgaatttaa 468
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct: 113 attttcaaggtaatgactaaaaataagatacga-attagtgactacttagttgaatttaa 55
Query: 469 aataaatgtaacagggagttcatcatgttctgaaaccaaaatatgaacacatgc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 aataaatgtaacagggagttcatcatgttctgaaaccaaaatatgaacacatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_i21.g1 MSMg01no308_i21.g1 CHROMAT_FILE:
MSMg01no308_i21.g1 PHD_FILE: MSMg01no308_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:54 2005
(641 letters)
>mm_chr14_109112459_109113499
Length = 1041
Score = 1168 bits (604), Expect = 0.0
Identities = 632/642 (98%), Gaps = 2/642 (0%)
Strand = Plus / Plus
Query: 1 ttttattttgttttttgttatttactgtatctacttgtcatctcatgattttcaaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttttattttgttttttgttatttactgtatctacttgtcatctcatgatttgcaaataat 260
Query: 61 gtgtgaccattggccatgtaagaaaccccaattctctaaagttcagattactgtgacttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgaccattggccatgtaagaaaccccaattctctaaagttcagattactgtgacttg 320
Query: 121 ccctgtgagttggataactaggtctcttagccattgaacagtttctctagccttagagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgtgagttggataactaggtctcttagccattgaacagtttctctagccttagagta 380
Query: 181 gtgtttttaatgccatcactatattactcattgtccattaggtatttggagtgttctaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtttttaatgccatcactatattactcattgtccattaggtatttggagtgttctaat 440
Query: 241 cagacattgactg-atgctcatcagttgttaaggattccccaacctctgatgtgtcctaa 299
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagacattga-tggatgctcatcagttgttaaggattccccaacctctgatgtgtcctag 499
Query: 300 tacagaaaatagaaactgatttgtgtttttgttatatacaacattcacaacaacacatgg 359
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 500 tacagaaaatagaaactgatttgtgtttttgttatatacaacatttagaacaacacatgg 559
Query: 360 aatattactcttcttacctgtattacccattcttgattccaggactgatacaattctgtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatattactcttcttacctgtattacccattcttgattccaggactgatacaattctgtt 619
Query: 420 tgttttcagtatagtccatccaggcttatatttatcttttgataaccagagtttatttac 479
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 620 tgttttcagtatagtccatccaggcttgtatttttcttttgataaccagagtttatttac 679
Query: 480 ttacatttcatgaataatgtatattttgctgttgtttcatcttggatgtaagaaggagga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttacatttcatgaataatgtatattttgctgttgtttcatcttggatgtaagaaggagga 739
Query: 540 gcaagaggcatagagaacttanaaagcaaaacaaacccccaaaactttaaagacccatgc 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcaagaggcatagagaacttaaaaagcaaaacaaacccccaaaactttaaagacccatgc 799
Query: 600 gccactccttggaggatactcaatcagaanaggagacttcct 641
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 800 gccactccttggaggatactcaatcagaaaaggagacttcct 841
Score = 122 bits (63), Expect = 8e-32
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 1 ttttattttgttttttgttatttactgtatctacttgtcatctcatgattttcaaataat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ttttattttgttgtttgttatttactgtatctacttgtcatctcatgattttcaaatagc 981
Query: 61 gtgtgaccattggccatgtaagaaacc 87
||||||||||| ||||| ||||||||
Sbjct: 982 gtgtgaccattcaccatgaaagaaacc 1008
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
