BAC Information

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BAC

Clone NameMSMg01-308I22
Chromosome14 (Build37)
Map Location 107,942,634 - 107,942,921
singlet/doubletsinglet
Overlap geneLOC668752
Upstream geneLOC668748
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308I22.T7 (MSMg01no308_i22.b1)MSMg01-308I22.TJ (MSMg01no308_i22.g1)
ACCAG432605AG432606
length760720
length of high quality
(start - end)
49 (310 - 358)289 (79 - 367)
definitionCHROMAT_FILE: MSMg01no308_i22.b1 PHD_FILE: MSMg01no308_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:54 2005CHROMAT_FILE: MSMg01no308_i22.g1 PHD_FILE: MSMg01no308_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGGGGAAAAANNAANNNANNANCCCCCCCNNNNNNCCACTACAANNN
AACTCTAAATTGCGGCGCTAAAGAATCACTAATCCNGACCGCANGGAANN
NGANNATTTNCAGCAGCAGAAGGNGNANNNGANNNNNNNAGNANNAGNNG
GGNNNNNNTTTTGNCCCCAAGCAAGGGGCCAGCCAANAAGAACACCANCA
CANCAGAAAAAGGGGGAGGCANAGGAGCCNCNCCCGGAGAAGGGNCNNAA
NGGGGCAAGGCACAGGACGGCCNNNCCCNCAGAANCNNCNCCANTTTTTT
TTTCGCAGNTCTTATATACAGGAACAATTCTGGGTTAGATTTTTACTATG
GGATGGCAATTTTTTCTCTTTTTAAGAAGCCCAGNCNNNGNACNGGAGGG
GGACTTTACCACCCCCCCCCANANAAAGAAGGGAANANCANCGAAGGGCC
GGCGCGGGGACCCCCGAAAGAAAAAAACAACNCAGGGGCCGGGNACNNNC
NACAGGGACACCCACCNCCCCNNNCCCGAGGNAANANANNNCCAANCANN
CAGAAGGGCCNAGAAGCAACCCCACAGANNCACACNCAAAAACCAGAAAA
AGAANACNAAAACACAACNAAAACCCCACCCCCAACCAGAGACCACCAAG
GGCACAGGCACCAAGAGGAAAAAANCAACCACGGAAACCCCAAGAAAAGG
TTTTTTTTTTTTTTAAGGCAAGAGGAAAAAATCATTTAGGAGAATCTGGG
TGGGCTTGTG
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACTTTTAGAAACCTTTAAC
TATGGATTTATTTATTTAAGTTTTATGGACCTCTTTCAAATGAAATAGTT
TTAAATGAAGAAGATATTTAACAGGAACTTGAGGCAATATAAGAAAACAT
TACTGTCCTACTTATCAAATTACTATTTCAAAATAACTATGCTGCTGTAA
CAGTTTATTTTTATAACATGATACTATGCAGGTAATAAAAAGTAATCTCA
GAATAGTGACGTGTATGAATATAAAAGTGTTCTCCTGAAAAATAAGGCAC
TAGGATTATTTTAAGTTTTCNATTTGTCCCANNGCAAAGCCGTTATTACT
TTCTAAAGTAGAATATATAACTGCACCCCCACACAANTATTCAAAAAAGG
GGGGGGGGGGGGGAATTAACCGAATTTCTTTATTCAATTTTGAGGCATAC
CTTGAAGGTACTTGGTCTCTTTCAGTAGCTAAAGAAGCAGTCACAACTCT
TCAGTAGCGCCATGAGCCAATACTCTGTAAGGTTCTGAAAGACCACTCGG
CAACCTTTCTTTTTCCTTATGTAACTGTGACACACTGCAAACCCCCTGAA
GCTATATTATCAGACCCTTGCACACCCCTTTTGGTTGAACTTATCAACCA
ACTCTATGAGTACAGATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_i22.g1 MSMg01no308_i22.g1 CHROMAT_FILE:
MSMg01no308_i22.g1 PHD_FILE: MSMg01no308_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:54 2005
         (289 letters)



>mm_chr14_107942434_107943122
          Length = 689

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacttttagaaacctttaactatggatttatttatttaagttttatggacctctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacttttagaaacctttaactatggatttatttatttaagttttatggacctctttca 260

                                                                       
Query: 61  aatgaaatagttttaaatgaagaagatatttaacaggaacttgaggcaatataagaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaaatagttttaaatgaagaagatatttaacaggaacttgaggcaatataagaaaac 320

                                                                       
Query: 121 attactgtcctacttatcaaattactatttcaaaataactatgctgctgtaacagtttat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 attactgtcctacttatcaaattactatttcaaaataactatgctgctgtaatagtttat 380

                                                                       
Query: 181 ttttataacatgatactatgcaggtaataaaaagtaatctcagaatagtgacgtgtatga 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttataacatgatactatgaaggtaataaaaagtaatctcagaatagtgacgtgtatga 440

                                                           
Query: 241 atataaaagtgttctcctgaaaaataaggcactaggattattttaagt 288
           ||||||| |||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 atataaacgtgacctcctgaaaaataaggcactaggattattttaagt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)