BAC Information

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BAC

Clone NameMSMg01-308O01
Chromosome14 (Build37)
Map Location 29,246,061 - 29,404,941
singlet/doubletdoublet
Overlap geneErc2, Wnt5a, LOC100040218
Upstream geneCcdc66, LOC665370, LOC100040206
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308O01.T7 (MSMg01no308_o01.b1)MSMg01-308O01.TJ (MSMg01no308_o01.g1)
ACCAG432828AG432829
length818730
length of high quality
(start - end)
198 (133 - 330)291 (128 - 418)
definitionCHROMAT_FILE: MSMg01no308_o01.b1 PHD_FILE: MSMg01no308_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:19 2005CHROMAT_FILE: MSMg01no308_o01.g1 PHD_FILE: MSMg01no308_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,404,744 - 29,404,941)(29,246,061 - 29,246,349)
sequence
TTTTTTTTTCTCCCCCGTCCCCCCCCTTCCCCCCCCCCCCCTCCCCTTTN
CTCCTCTAAAATTTGCGGCCCGCTATACGACTCTTTATTTTCCAGAGCGA
CCGCGGAATTCTGAAAGTTTGCCACGCACCAGGGGAAACAAAGGGTGTGG
TGGAGTATCTGAGCTAAGATCCTATACCTGACAAAGGACAGGATGGGGAA
ATTGGTAGCATCAGAACAAAGCTTAGACTCCACGGGGTGTTAACTATCTT
ACCAGTGGCCTTTTCTTAGTCAACACAACTCTAACAAGTTGTGAGTAGAG
ACAGATCCTCCTTAGTTTTTATCTCTAAATCTGAACATGTTTGCAAGCTC
TTTAAACACTCAGTAACAATATCAACTCGAGTGGGTGTGGCGGCCCATCT
GCAATCCCAGAACTTCTGAGCTCCAAACCGGAGTATACTGATAAACTAGA
CAAGCTCTAAGGTCAGCATAACACCCCACCACCATGTATAAGCTGCAGTG
TGAATATACCAACACACTCCCCACCGCCTGCATACCACCTACCCCCTACC
CATACTCTACATACCGACTTATACTAATATTTATGACCAAATTCCACCGT
CCCTATTACCAGCCATACCATACAACGATGAATTTCTTACAGACCCCTCA
GTATACTTTGCCCTTAATGACCCTCAAACTTCAATTACTCGCTTGAGATG
CCCCCCCCTCCCCAAATTGACTATGTAACCCTGAATCGGGCCCTCCCCCC
CTCAAAATTCCTTCAAAAGCCCCTTTCGCACCCCCTTCGTGCTTTTTGCC
CCACCTTACTCCCCTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGTGAAGTGGTACTTGCGTTT
CAATCTGAGGGGTAAATTGTATTTCCGTCAGTAATGTGGTGACATTCTAG
ACAGAAGGAACAGCAGGTGCCCAGGCCTAACAAATGGATGTCTTCGTGAA
CACAGCAGTACAGAGTGGAGAGCGGTTGGCAAGGCCACACGAGGTATTAA
GTAGAGTCCTCTGATCTTCTCCAAGATGCACATTGTGCTTATGCTATATG
GCTCTGGGCTGGAAGTTACCTTTAGAGCACACCAAGTTATAGCAAGCTGT
TTGGCTTTCCGTGGTAGCAGAGCTGACTTCAAACATAAATAACCTCCCCT
GGGGAAACCAGGAGAAACCCCCCACAGACTCCATTGCATGCAGAGAAGCC
TGGAAGGGCAAGACTAGCTAGAATGGGCTACAGGCTGGAGGGGCAGCATC
CAAGGTACGTGACAGGGTTGGAGGGTCCTTCTCAATGGCTGCTCGCATTC
TTTGGTGCATGTCTGTCCACACTGTTGGTCCACAGATGGCTACCTTAACT
TTGCTCACACTGCCCACTGCTGTGTCAGGATGCTCACTGTGTTAGCATGC
CACGTACCTCTTCCTATCCCCAACTCTGCTTGCTATTTGCAACTGTTACT
ACCTGCTACCTTCTAGGTCCTCAGTTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_o01.b1 MSMg01no308_o01.b1 CHROMAT_FILE:
MSMg01no308_o01.b1 PHD_FILE: MSMg01no308_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:19 2005
         (198 letters)



>mm_chr14_29404544_29405141
          Length = 598

 Score =  344 bits (178), Expect = 2e-99
 Identities = 193/198 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaaacaaagggtgtggtggagtatctgagctaagatcctatacctgacaaaggacagg 60
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gggaaacaaagggagtggtgtagtatctgagctaagatcctatacctgacaaaggacagg 339

                                                                       
Query: 61  atggggaaattggtagcatcagaacaaagcttagactccacggggtgttaactatcttac 120
           ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct: 338 atggggaaattggtagcatcagaacaaagcttagacttcagggggtgttaactagcttac 279

                                                                       
Query: 121 cagtggccttttcttagtcaacacaactctaacaagttgtgagtagagacagatcctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagtggccttttcttagtcaacacaactctaacaagttgtgagtagagacagatcctcct 219

                             
Query: 181 tagtttttatctctaaat 198
           ||||||||||||||||||
Sbjct: 218 tagtttttatctctaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no308_o01.g1 MSMg01no308_o01.g1 CHROMAT_FILE:
MSMg01no308_o01.g1 PHD_FILE: MSMg01no308_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:19 2005
         (291 letters)



>mm_chr14_29245859_29246549
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   agtaatgtggtgacattctagacagaaggaacagcaggtgcccaggcctaacaaatggat 62
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 203 agtaatgtggtgacattctagacagaaggaacagcaggtgcccaggcctagcaaatggat 262

                                                                       
Query: 63  gtcttcgtgaacacagcagtacagagtggagagcggttggcaaggccacacgaggtatta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcttcgtgaacacagcagtacagagtggagagcggttggcaaggccacacgaggtatta 322

                                                                       
Query: 123 agtagagtcctctgatcttctccaagatgcacattgtgcttatgctatatggctctgggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtagagtcctctgatcttctccaagatgcacattgtgcttatgctatatggctctgggc 382

                                                                       
Query: 183 tggaagttacctttagagcacaccaagttatagcaagctgtttggctttccgtggtagca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggaagttacctttagagcacaccaagttatagcaagctgtttggctttccgtggtagca 442

                                                            
Query: 243 gagctgacttcaaacataaataacctcccctggggaaaccaggagaaac 291
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagctgacttcaaacataaataacctcccctggggaaaccaggagaaac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)