Query= MSMg01no309_j13.b1 MSMg01no309_j13.b1 CHROMAT_FILE:
MSMg01no309_j13.b1 PHD_FILE: MSMg01no309_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:13 2005
(321 letters)
>mm_chr14_59242892_59243610
Length = 719
Score = 549 bits (284), Expect = e-161
Identities = 310/320 (96%), Gaps = 6/320 (1%)
Strand = Plus / Plus
Query: 4 ggaattccatcatatcttgtcttattactgaaatagtttttgagagtaaaagtctggtga 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatcatatcttgtcttattcctgaaatagtttttgagagtaaaagtctggtga 263
Query: 64 aaatagcacagttcttttcagaca--agatccagagaaatgatgtttcatttctttctgt 121
|||||| ||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 264 aaatagtacagttcttttca--catgagatccagagaaattatgtttcatttctttctgt 321
Query: 122 tttcttaagagttctttggtgtagtgttactctatagaagggacctttaaaggaagccaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttcttaagagttctttggtgtagtgttactctatagaagggacctttaaaggaagccaa 381
Query: 182 attaaaacttcagttgcaaccagccttgttttaaaaacatgattttaacaggaaaaaata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 382 attaaaacttcagttgcaaccagccttgttttaaaaacatgattttaacaggaaaaa-ta 440
Query: 242 tcaatgtagacacttcaaatgtaaaagtgagataaattcaccagtatttttgtctaagaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgtagacacttcaaatgtaaaagtgagataaattcaccagtatttttgtctaagaa 500
Query: 302 aaaaaaatccaaaatatgtg 321
||||| |||||||||||||
Sbjct: 501 aaaaat-tccaaaatatgtg 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space: 221520
Effective search space used: 221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_j13.g1 MSMg01no309_j13.g1 CHROMAT_FILE:
MSMg01no309_j13.g1 PHD_FILE: MSMg01no309_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:13 2005
(242 letters)
>mm_chr14_59320033_59320674
Length = 642
Score = 391 bits (202), Expect = e-113
Identities = 214/218 (98%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 1 ttagatgagcgcaaagcataggaagatgaatgtatgaatgcacaaatgcacagtgtcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttagatgagcgcaaagcataggaagatgaatgtatgaatgcacaaatgcacagtgtcaca 307
Query: 61 gtcagccaggggtgtcccacaagaaggtaagaccttgagtgatctctttctttacactct 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 atcagccaggggtgtcccacaagaaggtaaggccttgagtgatctctttctttacactct 247
Query: 121 tgttttggactcctctctcccacctcttaggtgacaagctctaaagatatatgtatatat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 246 tgttttggactcctctctcccacctcttaggtgacaagctctaaagatatatata-atat 188
Query: 181 atatatatatatatatatatatatatatatatatatat 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atatatatatatatatatatatatatatatatatatat 150
Score = 93.5 bits (48), Expect = 1e-23
Identities = 51/52 (98%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 181 atatatatatatatatatatatatatatatatatatatatatgtatatatat 232
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 150 atatatatatatatatatatatatatatatatatatatatat-tatatatat 200
Score = 89.7 bits (46), Expect = 2e-22
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 174 tatatatatatatatatatatatatatatatatatatatat-atatatat 222
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 151 tatatatatatatatatatatatatatatatatatatatattatatatat 200
Score = 87.7 bits (45), Expect = 6e-22
Identities = 48/49 (97%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 175 atatatatatatatatatatatatatatatatatatatatat-atatat 222
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 150 atatatatatatatatatatatatatatatatatatatatattatatat 198
Score = 85.8 bits (44), Expect = 2e-21
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 167 atatatgtatatatatatatatatatatatatatatatatatatatatatat 218
|||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 150 atatatatatatatatatatatatatatatatatatatatat-tatatatat 200
Score = 85.8 bits (44), Expect = 2e-21
Identities = 50/52 (96%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 189 atatatatatatatatatatatatatatatatatgtatatatatatatatat 240
|||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 150 atatatatatatatatatatatatatatatatatatatatat-tatatatat 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
