BAC Information

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BAC

Clone NameMSMg01-311A03
Chromosome14 (Build37)
Map Location 101,688,253 - 101,703,557
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421
Downstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311A03.T7 (MSMg01no311_a03.b1)MSMg01-311A03.TJ (MSMg01no311_a03.g1)
ACCAG433633AG433634
length815724
length of high quality
(start - end)		211 (46 - 256)642 (75 - 716)
definitionCHROMAT_FILE: MSMg01no311_a03.b1 PHD_FILE: MSMg01no311_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:44 2005CHROMAT_FILE: MSMg01no311_a03.g1 PHD_FILE: MSMg01no311_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,688,253 - 101,688,455)(101,703,083 - 101,703,557)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCATTTAGCACCATATTTTAAAAAGAAAAGACTTTTTAAAAAAC
TTTCTAAAAATTACAGAAACATTTGTGCAAACATTTCTCTGGGAGTTCTA
TGGCATTAGATCAGATATCTAGCTCCAGTAAACATCTAGCTCCAAAAAAT
ATTCATATTATAATCCATAAAAGTAGTAAAATGTCAGTTATTAAGTAGCA
GCAAAATANATATAGTTGAAGCACTACACTGAAACGTATTAAGTGCACAC
TANGGGNCCCCACNTTAAGGAAGGTTGAGAAACACTCTTCTATGGNAGTT
GTTGTGGGTTTTTTATTAATACTCTTCAAAGGGAACTCATTCTTGGAAAA
TCCGGATTTAAAAACTAACCCCCGCCCTAAGGGGAATTAACTAAATCCCC
NNATTAAAAAAAGTTAAGGGAAAAAGGGGGTGGGAAAAAAAAAAAGAGGN
NNNNNNGGCCTATTGAAGAAGGGNNNNNNNNNNNNNNNNNNNNNNNAAAG
TGTCTAAAACTGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGAGGNNNNNNNNNNNNNNNNNNNNNNNNGAAGGATG
CCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGNNCTCCNN
NNNNNNNNNNNNNNNNNNTTAAAGAATTTTACCCTTGGGGNNNNNNNNGG
GGGGGGTTCGAAATCNNNNNNNNNNNNNNNNNNNNNNNNACCCCCCTCTC
TGGGGGGGGGTGTTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGTCTTGGGAGAAGAAATTATTCA
CAGAAATCTACATGGAGGTCTGAATTATGTCTTATATGACTCTCCTCTTT
CTCTATTATGTTCTGGGGACAGGTTCCTTTCCTTGGACCAACTCTAGCCA
CTGTTCTGCCACTCAACTTTTTTGTGGCTTCTTAGTGGCTCCACGGGAAT
CTGTATGTAGAGATGGGGCAGAGTGAACTTTAGTGATCCATAGTTAAGTC
TCAAAGATGAACAATGTCAGCTACAAGGGACTTGGTTAGAAAGAGATCAG
AACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGAC
GAAAGGATGGATCATCTAGAGACTGCCATATCCAGGGATCCACCCCATAA
TCAGCTTCCAAACGTTGACACCATTGCATACACTAGCAAGATTTTATCGA
AAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCAGGGGCCTAGCAA
ACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCATAGGGCTCC
CAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGGCACC
CTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGAC
TCTAGCTGCATATGTATCAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_a03.b1 MSMg01no311_a03.b1 CHROMAT_FILE:
MSMg01no311_a03.b1 PHD_FILE: MSMg01no311_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:44 2005
         (211 letters)



>mm_chr14_101688049_101688659
          Length = 611

 Score =  377 bits (195), Expect = e-109
 Identities = 201/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcatttagcaccatattttaaaaagaaaagactttttaaaaaactttctaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcatttagcaccatattttaaaaagaaaagactttttaaaaaactttctaaaa 264

                                                                       
Query: 65  attacagaaacatttgtgcaaacatttctctgggagttctatggcattagatcagatatc 124
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 attacagaaacatttgtggaaacatttctctgggagttctgtggcattagatcagatatc 324

                                                                       
Query: 125 tagctccagtaaacatctagctccaaaaaatattcatattataatccataaaagtagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagctccagtaaacatctagctccaaaaaatattcatattataatccataaaagtagtaa 384

                                  
Query: 185 aatgtcagttattaagtagcagc 207
           |||||||||||||||||||||||
Sbjct: 385 aatgtcagttattaagtagcagc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no311_a03.g1 MSMg01no311_a03.g1 CHROMAT_FILE:
MSMg01no311_a03.g1 PHD_FILE: MSMg01no311_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:44 2005
         (642 letters)



>mm_chr14_101703083_101704124
          Length = 1042

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtcttgggagaagaaattattcacagaaatctacatggaggtctgaattatgtctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttggtcttgggagaagaaattattcacagaaatctacatggaggtctgaattatgtctta 416

                                                                       
Query: 61  tatgactctcctctttctctattatgttctggggacaggttcctttccttggaccaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tatgactctcctctttctctattatgttctggggacaggttcctttccttggaccaactc 356

                                                                       
Query: 121 tagccactgttctgccactcaacttttttgtggcttcttagtggctccacgggaatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tagccactgttctgccactcaacttttttgtggcttcttagtggctccacgggaatctgt 296

                                                                       
Query: 181 atgtagagatggggcagagtgaactttagtgatccatagttaagtctcaaagatgaacaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 295 atgtagagatggggcagagtgaactttagtgatccacagttaagtctcaaagatgaacaa 236

                                                                       
Query: 241 tgtcagctacaagggacttggttagaaagagatcagaacaaaacacccatggaaggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgtcagctacaagggacttggttagaaagagatcagaacaaaacacccatggaaggagtt 176

                                                                       
Query: 301 acagagacaaagtttggagctgagacgaaaggatggatcatctagagactgccatatcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 acagagacaaagtttggagctgagacgaaaggatggatcatctagagactgccatatcca 116

                                                                       
Query: 361 gggatccaccccataatcagcttccaaacgttgacaccattgcatacactagcaagattt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115 gggatccaccccataatcagcttccaaacgttgacaccattgcatacattagcaagattt 56

                                                                  
Query: 421 tatcgaaaggacccagatgtagctgtctcttgtgagactatgcaggggcctagca 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tatcgaaaggacccagatgtagctgtctcttgtgagactatgcaggggcctagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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