BAC Information

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BAC

Clone NameMSMg01-311O06
Chromosome14 (Build37)
Map Location 74,086,783 - 74,087,147
singlet/doubletsinglet
Overlap genenone
Upstream geneFndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2
Downstream geneLOC100043734, EG629578, LOC629583, Htr2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311O06.T7 (MSMg01no311_o06.b1)MSMg01-311O06.TJ (MSMg01no311_o06.g1)
ACCAG434261AG434262
length747746
length of high quality
(start - end)		371 (46 - 416)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no311_o06.b1 PHD_FILE: MSMg01no311_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:51 2005CHROMAT_FILE: MSMg01no311_o06.g1 PHD_FILE: MSMg01no311_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGTGGCACCAGGTAATTTGTACCCACAGTCCTGACAGCCTTGG
AAAGCTGTATTCAACATGAGGGAATTCAAGACCACCCTTCGTTGTGTTTC
TAATTTCCCATGAATACTTTCTCTCTCTGATTCCACTATAAAGGTTTCTG
TCTCAAGCCACACAAAGTTGCAATCCAAAGGAGTCTTCAAGATGGAGAAA
AAAATATCCATTAATCAAAGAGAAATAGAGGTGACAAGATAAATTCACAG
AGCCCTCCAGGGTTGGGCTTTCCAGATACCAGCAAATAGAATTGCCGCCC
CCATCCACTCACCAAACACAGATGCTTTCTAACCCAAAGCCTTTGTGACT
GCAATAAAGCTGCAGCACCCCCCCCTCCCAAGTAAAAAGTAAAGTAACAA
AAGTGCATCAGAGACACAGACAATGCCAAGCACTAAAACTAGCAAAATCC
AAAATCAGAGGATCTTGGGAAGTCAGTATGAGATTGTCTCAGAGTTCATT
TATCCCATGATCACAAGCCAGGTGTTGGCAGGATCCCTTCTAAACATTAC
AAGATGAGAGTGAAATCCATTTAATATCAAAGACTACCATATTGTTACAA
CACAGTCCATAACTTCTGTAGATAGAAAATTGTTTGTCCCACTGAGCCCA
TGCAAGAATTTAAATTCCTGAGTCATGTTAATATCATCCATAACAGT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAACTAGATGTTCCCTGAC
ATAATGATTCTTACACAATTAAAAATTGAGGCATGGGACACAGCACAGCA
CAGCACAGCACAGTCCTAATGGCCCAGGTGCTTGCTGTGTGCTCTCATCT
TGGAAACAATGTAATAACTACAATGGTAGTTCCAGATTAATGGTTGACTT
GCAAAGAATGTTTGAAGAAATTATTAGAAAGTGAAATAGAGCCAACATTG
GAACCCTGAGAAAGAAAAAATAAACTACTAAAGTTATAAAAGAAGTTTTG
TACAACATTTAAGAGTGTTTTCNGTATACCCCCCCCACCAATGCATAAAA
TTATATATTAGTAAAACTAACCCCCCACACAAAAAAAAAAAAAAGAGGCG
TGGTGTGCGGTGTGCANAANCAGAAAGCTAGCAGAACTACTAAGTTAAGG
GTTAACTTGATTCTTTCTGGCCACTGTTTGGCAGCTTTGCCCATGTCATT
TATCATTAGAGCTTCACAAGAAAATGCAAGTAGCTGACCTTGAAGCTCTG
AGCTCTGAAGTATAATAAGTCAAAAGTTAAAGTTTAACTAACGAAAAGTT
TGCAATTATTATTATTTTGGCTATAGCCTTGGGAATAGGTTAAGCTTGCA
ACTTTGTGGAATAATTGTAATTCTTGATTCTTTGTGCGATGTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_o06.b1 MSMg01no311_o06.b1 CHROMAT_FILE:
MSMg01no311_o06.b1 PHD_FILE: MSMg01no311_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:51 2005
         (371 letters)



>mm_chr14_74086579_74087348
          Length = 770

 Score =  700 bits (362), Expect = 0.0
 Identities = 365/366 (99%), Gaps = 1/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagtggcaccaggtaatttgtacccacagtcctgacagccttggaaagctgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctcagtggcaccaggtaatttgtacccacagtcctgacagccttggaaagctgta 510

                                                                       
Query: 65  ttcaacatgagggaattcaagaccacccttcgttgtgtttctaatttcccatgaatactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcaacatgagggaattcaagaccacccttcgttgtgtttctaatttcccatgaatactt 450

                                                                       
Query: 125 tctctctctgattccactataaaggtttctgtctcaagccacacaaagttgcaatccaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctctctctgattccactataaaggtttctgtctcaagccacacaaagttgcaatccaaa 390

                                                                       
Query: 185 ggagtcttcaagatggagaaaaaaatatccattaatcaaagagaaatagaggtgacaaga 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggagtcttcaagatggag-aaaaaatatccattaatcaaagagaaatagaggtgacaaga 331

                                                                       
Query: 245 taaattcacagagccctccagggttgggctttccagataccagcaaatagaattgccgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taaattcacagagccctccagggttgggctttccagataccagcaaatagaattgccgcc 271

                                                                       
Query: 305 cccatccactcaccaaacacagatgctttctaacccaaagcctttgtgactgcaataaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cccatccactcaccaaacacagatgctttctaacccaaagcctttgtgactgcaataaag 211

                 
Query: 365 ctgcag 370
           ||||||
Sbjct: 210 ctgcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 770
Length adjustment: 9
Effective length of query: 362
Effective length of database: 761
Effective search space:   275482
Effective search space used:   275482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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