BAC Information

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BAC

Clone NameMSMg01-312G20
Chromosome14 (Build37)
Map Location 47,307,952 - 47,308,237
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312G20.T7 (MSMg01no312_g20.b1)MSMg01-312G20.TJ (MSMg01no312_g20.g1)
ACCAG434648AG434649
length789757
length of high quality
(start - end)
89 (65 - 153)290 (69 - 358)
definitionCHROMAT_FILE: MSMg01no312_g20.b1 PHD_FILE: MSMg01no312_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:30 2005CHROMAT_FILE: MSMg01no312_g20.g1 PHD_FILE: MSMg01no312_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTCTTG
ACCTGTACCAACACCAGAGAAGAGATTTCTGATGCTTCAAGTTACACATT
TGTTATGGTAGACACACACACACACACACACACACACACACACACACACA
CACATACATACACACACCGCAGAGAATAATCAAATACATAGCCTAAAAAG
GTTTGATAGCAATTGGAATTGTGTTTCTTCAAAGTTCACATTTTAGAGGA
CTCATCTAGCACAATTGATATCTGTGATCGCTATTTTTCCTTGTTAACTT
GACTACCACTGTAATTTTTTATTACCTCAGAAGGAACTTCGATCATGATG
CCTTGTGATCTCACACTTTCAGCCTGCATAACTATTGTAAGTAAATTTTT
ATAGTAACCCCCCTCCTTTTGACTCTGGAACTGTGATGATATCCTTGCGA
AAGTATCTTGACACGGTAGACAGAATTTCTGAAACTATACTGAGCGCGTC
TAGGGTATAATACACCTCGAGAGCATTTCTCTATGATCTGATGATCTTAT
ATTTTTTTCATTCTATCATGCATCTTTTGTTATTTTTCTAGTTCTTACTC
CCGCTTACCCGTTCTTATTTAATTTCTGGCATTATCCTGTATATCTCCTA
TATCTTGTCTTATTCCTGATTTTTTTATTATTCAATACCCTTTATTCCTT
ATTCATGTACTCATTTAGATGTAATTTTAAAGCACAAACTTTAAATAAAC
ATACTGCATTTTTTTCACCCCTTGTTTCCACCCTTATCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTGCCAGCCTGAGCCCAGCTTTTCTATTCA
GAGTAGTGGATGGCTATCTTTCCTTTCTCCCAACTTGTCTCTGCAACCCC
CCTCCAGTCCCACTCCCAGCTCCCTATGTGGGCTGTTCTTCTTGTTCCTA
GTGCTTGGGTCGCCCTTTATCTACTCGAATCTGTGTAAGGGGATCCTGCC
AAGATGATCAGATGAGAACTCAGCGCCAGAAACATTTTAATTAATTTATG
GTGATAAAATGCGAAAAGAAAACCATTGAGGAAAGACTGGGCCAAAGAAA
ATTATTCAATGNATTACCAAAGCAANCACAGACGTGCGGTCTTGGAAGGA
AGGGCCTGGCCCCCAAAGGAAAAAAAAAACTTCTTTTCTCTTCCCTTCTT
TGCTATTTTAACAGTTCCCAAGTGCAACAACGGACAGAAGACCCCGGGGC
AGGGACAGAGGGGACAAGGTGGAAAACTGAGCAGCCAGCTCTTGGTCTGG
CACTTCTTGCAGAGGCTGTTTGAGGTTGGATGTCCGGGAAACATAAAGTG
TAAGCCGAGGGTTATGAGCCCCAGCGTAGGGAGTCCAGTGTTTCTCAGGA
GAGGTGAAGAGGAATGTTTCTTATGATTCAGCTAAGAGGGAAAATAATAA
ACCTGCAAATTGGATAGTGTTTATTTGTTCCAGTCCTGTGGATTGAACCC
AGGATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_g20.g1 MSMg01no312_g20.g1 CHROMAT_FILE:
MSMg01no312_g20.g1 PHD_FILE: MSMg01no312_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:30 2005
         (290 letters)



>mm_chr14_47307752_47308441
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgccagcctgagcccagcttttctattcagagtagtggatggctatctttcctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 486 ctctgccagcctgagcccagcttttctattcagagtagtggatggctatttttcctttct 427

                                                                       
Query: 61  cccaacttgtctctgcaacccccctccagtcccactcccagctccctatgtgggctgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cccaacttgtctctgcaacccccctccagtcccactcccagctccctatgtgggctgttc 367

                                                                       
Query: 121 ttcttgttcctagtgcttgggtcgccctttatctactcgaatctgtgtaaggggatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcttgttcctagtgcttgggtcgccctttatctactcgaatctgtgtaaggggatcctg 307

                                                                       
Query: 181 ccaagatgatcagatgagaactcagcgccagaaacattttaattaatttatggtgataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaagatgatcagatgagaactcagcgccagaaacattttaattaatttatggtgataaa 247

                                                         
Query: 241 atgcgaaaagaaaaccattgaggaaagactgggccaaagaaaatta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgcgaaaagaaaaccattgaggaaagactgggccaaagaaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)