BAC Information

Click to search

BAC

Clone NameMSMg01-312L13
Chromosome14 (Build37)
Map Location 48,521,069 - 48,521,302
singlet/doubletsinglet
Overlap gene4930447J18Rik
Upstream geneSamd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L13.T7 (MSMg01no312_l13.b1)MSMg01-312L13.TJ (MSMg01no312_l13.g1)
ACCAG434858AG434859
length786723
length of high quality
(start - end)
234 (122 - 355)284 (70 - 353)
definitionCHROMAT_FILE: MSMg01no312_l13.b1 PHD_FILE: MSMg01no312_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:52 2005CHROMAT_FILE: MSMg01no312_l13.g1 PHD_FILE: MSMg01no312_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTGGAAACTGCTCTCTTTCACAGTTGGCTTGAGACCAAGAGCTGGTGC
CATTCTGCCCTATAATCATCGTCTCAGGTAGATGATCTGTAGTTCCCCTG
TGTGTCTCTGTTCTCCTTCTTCAGAGCTTCTTGTACACCAAAAGAGAATG
AGTCTCCAGTTTGGAGTTTAAGAAAATATAAAAGGGTAAGATGTAGCTCA
GTGACGGGGCATGTACCCAGCATGCCCAGCGTTCTGAGTTAGAGCAAAAG
AGACAGAAGGAAATAAAACAAGGAAAGAGAGGAGAGGAGGAGAGGGAGAG
ATGGGGGATTTTTTTTTTTCCCCCCCCCCCCCCCCCCNTTTTTTTTTTTT
TTGTTTGTTCTGTTTGTTTTTTCCCCCCCCAAAAAAAAAATAAAAAATTA
TCGGTGGGGGGGTTCTTTTTACCCTTTTTTTCTATCATTCTTTTTTCCCT
TTTTATTTGTTTTTCCGTTTTTTTCTTGCAATGTTTTTTCCTTTATTCCT
TTTTTTTTTGTTTCTCTTCTTTCTTTTCTTTACGTACATCAATTATACTA
TATTCTTCTCTTCCTCCTTTCCAAGTAGTCTTTTTCTCTTTTTTTTTTCT
TTTTTTTTTCTGTTTATTGTTTTTATTTTGGTTATTTATCTTTATATCTC
TGTAAATTTATTATTTTGTTCCATTTTTCCCCCTATTTTTTTTTACCCTT
TCTTATTACACTTCTTTATTATTTTGTTTACTTTAT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAACAGGAGCAGAGGCAGGAGCCATGGATGA
ACACTCTGTACAGACTTGGTCAGGCTTTTACTTTGCACTAGGACCACCTG
CCCAGAGGAGGCACTGGCCACGGTGGACTGGGCCCCCTTATCTGTTAGTA
GTTGAGAAAGCTTGTCATGGACTTGCTCACTGGACAATCTGATGAACTTG
TTTCTTTAATTGAGCTTCTCTCCTCCCTTGCTGGGTTCTTACAGAGAGAG
CTAGAACACTTATATATAAGACTTGTGAATGATTGTGTACAACCCCAGCA
CTATTGNCTAATGACCCGNTACGAGTCGCTCTTCAGGGCAGTGCATTTCA
GTTATGTTCTACCCCCCTTGAAAAAAATTTGTAAACTCGGGGGGGGAGAT
AAGAATCTTTACCTTGCTGGGGCCATGGGATGGGGACAGGGTTGGGTGAG
TAGTGATTCTGAGTCAGGAGAGGAGGCAGTAACGTTACTCATGCTCTCTG
GACTGGCTTCCAGATTCTAAATGTTTTATTGAAAGAATTGAAGTACATGC
AAGCAGCTAAGGAGCTAGGCCAGGACCTAGGGCGGGCATGCTTGCTGTCA
GAGAGCAGTGTATGGGCCCACTGCTGCTTTTGCAGGTTCAGAAGTAGATT
GGTATGGGAAGAATGTTGGTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l13.b1 MSMg01no312_l13.b1 CHROMAT_FILE:
MSMg01no312_l13.b1 PHD_FILE: MSMg01no312_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:52 2005
         (234 letters)



>mm_chr14_48520869_48521502
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcaggtagatgatctgtagttcccctgtgtgtctctgttctccttcttcagagcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctcaggtagatgatctgtagttcccctgtgtgtctctgttctccttcttcagagcttct 375

                                                                       
Query: 61  tgtacaccaaaagagaatgagtctccagtttggagtttaagaaaatataaaagggtaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtacaccaaaagagaatgagtctccagtttggagtttaagaaaatataaaagggtaaga 315

                                                                       
Query: 121 tgtagctcagtgacggggcatgtacccagcatgcccagcgttctgagttagagcaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtagctcagtgacggggcatgtacccagcatgcccagcgttctgagttagagcaaaaga 255

                                                                 
Query: 181 gacagaaggaaataaaacaaggaaagagaggagaggaggagagggagagatggg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gacagaaggaaataaaacaaggaaagagaggagaggaggagagggagagatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)