BAC Information

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BAC

Clone NameMSMg01-312P11
Chromosome14 (Build37)
Map Location 113,835,837 - 113,836,105
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791, LOC100043821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P11.T7 (MSMg01no312_p11.b1)MSMg01-312P11.TJ (MSMg01no312_p11.g1)
ACCAG435035AG435036
length740756
length of high quality
(start - end)
232 (123 - 354)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no312_p11.b1 PHD_FILE: MSMg01no312_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005CHROMAT_FILE: MSMg01no312_p11.g1 PHD_FILE: MSMg01no312_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TGGCATTCCCTGAAATTTCCTAAACAAAACTCCAATGGCTCATGCTCTAA
GATCAAGAATTGTTACCCGGAAACTCATAAAACTGGAAAGCATCTGTAAG
GCAAAGGACATAGTCAATAAGATAAATTGGCAACCTACTGATTGGAAAAT
AATCTTCAATAACCCCACATCTGATAGAGAACTAATATCCAAAATATATA
AAGAACCCAAGATGTTAACCATCAAACAACCAAACAACCCAATCAAAAAA
TGGGGTGTAGAACTAAACTGAGAATTCACAACTGAGGAATCTCGAATGGA
TGTGATTTTTTTAAAGAAACATCTCCAAGTTCTTAGTGATCAGAGAAATG
CAAATCTAAACCCCCCTGAGATTCCATCTTACACCAATCAGAAAGGCTAA
GATCAAAACCTCAGGTGACAACACATGTTGGAGAGGATGTGGGGAAAAAG
GAAACTCTTCCATTGCTGATGGGATTGCAAATTGGAACAACCACTCTATA
AATCAATCTGGAGGTTCCTCAGAGAACTGGAAATAGATCTACCTGAAGAC
ATAGCTATACCACTCTTGGGAATGTACACAAAAGATGCCCCACCATGCCA
CAGGGGCATGTGTTCCACTATGTTTGTAGCAGCCTTATTTGTGACAGCCG
GAAGCTGGATAAAACTAGATGTCACACTACAGAAGAATAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTATTCCTCTTGACTCTATCTCCACCATGAA
GAAATTTCAGGTTAGGCAAATCCTGCCACGCCTGGACAAACCAGCTTTCA
TAACAACAGTAGAAATGGGCTACAACATAAAATCAGCAAAACAGAATATG
CCAGTGTTATGAGGACTTACAAAGTACAGTTTATTTCAAACCTGAAGCAA
ATGATAAAGTAATAATTTCACATACTTAAAATTTGTCATTATGTTGCTAA
AACTACATTTGAGTAAACTTGAGTTATATATATATATATATATATATATA
TATATATANATTTANATACCTATATCTATNACCCAATAAATTCTACTAGG
AATAATCAGGGTTGCCCGCCAAAAAACTAGGAAAAAAAGGGGGGGGGGGT
TTACTAGAAATTATAGCATTACCTAGCTAAATAAAGAATAATAAGGAGCC
TGCTATACAATTAAGCCTTGTGTGTGCATGTGCGTATGTGTGTGCGTGCG
TGTGCGCGTGTGTGTATGTTCCTGCGCGCGCCCGTTCCTCCTTTTAATTC
TATCTTTAATTTCACTATAAAATGTGTTATTCAATACTTTTAAGCATTTA
TCTTCTTTTTATTCCCTATATCCCTATCTTCCTCCTTACTCATTATTTTG
CAATTATTTCAGTGTTTAATAGCCTCTCTTTTTTACGGGTTCCACGCAAA
AATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p11.g1 MSMg01no312_p11.g1 CHROMAT_FILE:
MSMg01no312_p11.g1 PHD_FILE: MSMg01no312_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:10 2005
         (290 letters)



>mm_chr14_113835657_113836346
          Length = 690

 Score =  478 bits (247), Expect = e-139
 Identities = 265/271 (97%), Gaps = 2/271 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattcctcttgactctatctccaccatgaagaaatttcaggttaggcaaatcctgccac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 449 ttattcctcttgactctatctccaccatgaagaaatttcaggttaggcaactcctgccac 390

                                                                       
Query: 61  gcctggacaaaccagctttcataacaacagtagaaatgggctacaacataaaatcagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 389 gcctggacaaaccagctttcataacaacagtagaaatgggctacaacatgaaatcagcaa 330

                                                                       
Query: 121 aacagaatatgccagtgttatgaggacttacaaagtacagtttatttcaaacctgaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacagaatatgccagtgttatgaggacttacaaagtacagtttatttcaaacctgaagca 270

                                                                       
Query: 181 aatgataaagtaataatttcacatacttaaaatttgtcattatgttgctaaaactacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aatgataaagtaataatttcacatacttaaaatttgtcattatgttgctaaaactacatt 210

                                          
Query: 241 tgagtaaacttgagttatatatatatatata 271
           |||||||||  ||||||||| ||| ||||||
Sbjct: 209 tgagtaaac-agagttatat-tatgtatata 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)