BAC Information

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BAC

Clone NameMSMg01-313H09
Chromosome14 (Build37)
Map Location 69,905,944 - 69,906,241
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37
Downstream geneD930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313H09.T7 (MSMg01no313_h09.b1)MSMg01-313H09.TJ (MSMg01no313_h09.g1)
ACCAG435380AG435381
length1,2871,302
length of high quality
(start - end)
299 (508 - 806)263 (508 - 770)
definitionCHROMAT_FILE: MSMg01no313_h09.b1 PHD_FILE: MSMg01no313_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:11 2005CHROMAT_FILE: MSMg01no313_h09.g1 PHD_FILE: MSMg01no313_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACTTANNNNNNGGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCACAAGGCTCCACCCCTATAAGGAGAACGATGGGCAAT
TAATAGTTGCTAGGAAACCTTTAATTAGCCTTCCCCTGGGATGAGCCCCC
TGATAGGCTATCCAATCCCAAGAGGTCATTCCTAACCACTCCTGAGCAAC
ACTCAGTTATCTCAGAAGGATGTATTTATAAATGCATATGTATATGTGTA
ACAATAATAAAGAATAAGAGGCCAGGGGCTAGAGAGATGATTCAATGGTA
AGGAGTCCTGGATGCTCTTCCACAGGCCCTAAGTTAGATTCCCAGCACTC
ACATGCAACCCACAGCTCCCTACAACAGGATCTGATGTCCTTTTCTGGTA
TTCAGATGTATATAAAGACAAAGAACCTGTATACATAAAATACACAGATA
AGTAAATCTTTTATTTATAAAAAGAGGAAGAAGAGGCCATGAATTTGAGG
AGAATGTATAGCAAAGAACTCAAGAGTTGGAGGGAGGAGAAGAAGGGGAA
ATTATATAAATACAGTACTTATATGTGAAATACATACAAAAATAAATATT
AAAAAAATCAAAACATGAAAAGAATTCAAGTCAGGCCCAACTGCAGATTT
GTGTTGGGTTTACAACAAGTGTTCAGCATTTTTTTTCTACCTCTCTCTAG
GGTGGACTGTGTGCTCAATGTCTATGTCACACTCAGTGGATTGCAAGGGC
CACATTTCTAAGACATGCCTGCAGCCAGGGGTCTAGATGTGCTGCTCTGC
CAATAGATAGAACTGGAGAGATCCAGAAAGCAGAAGTGCAACCAGAGCTG
TCTTCTTCTGCTCACTGTTTTCTTGCTTCCCTGGGAAGCTTGCAACAGGA
GGTTTGGTGTGTTGTGTAAGCATAATGTCCCTCTCTACTCTACTTCTCTT
ATGTTTTCCCATCAATATTTTCTTTTTCTTATCTTTTTATTTTCTTTTCT
CCTTCCTTCAATAAATTATTTTTCTCATCTTTCTTCTTCTTTCTTTTTCT
AAATTTTCATTATCATCTTTTTTCCTTGTTTTTTCTTCTCCTCTTCTCTT
TCCTTTCATTTTCCTGTCTTTACTTTCCTGATCATTATATCTCTACTCAC
TCCATCCTCACTTTACCTTCTGTTTTTTACTTACTACACTTTCCTAACTA
TATTCCTTCTCATCTTACTATTTCATTACTCAATATTCTACTTCTTTCTA
CATATTTCACTCCTACATTTTCTATCACTTCTATTTC
NNNNCCCAAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACAACCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGCCCGAATGGCTAAGATCA
AAAATTCAGGTGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GATTTTTTTTGCCCCCCACCAGAGGAATGGATACCCAAAAAGAAAAAGAG
GTACGCNATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
AAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
ACCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACAT
GAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA
GAAGTGGGAACAAAACACCCTTGGGAGGAGTTACAGAGTCAAAGTTTGGA
GCTGAGATAAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCA
CCCCACAATCAGCATCCAAACGTTGACACCATTGCATACACTAGCAAGAT
TTTGCTGAAAGGACCCAAATGTACCTGTCTCTTGTGAAACTATGCCGGGG
CCTAACAAAACAGAAAGGGATGCTCACAGTCCGTTAATGGATGGATCCAC
AGGCTTCCCAATGGAAGAACTAAAAAAAAGACCCAAGAAGCTAAAGGGAT
CTGCACCCTTATAGTGGAACAACAATATGAATTTACCGGTACCCCCGAAG
TCTTTGACTCTAATTGGAAATAAATCAAAAAAGGGCCCACCCCCCCTCTC
TGGAAAGAAAGACCCCTTTGGAATTGCAACTTTATTTTCCCCCTCATGGG
GTAAACCACTGCCTAAAAAGGGTATGTGGGGTTTTATTAAAATGTGCTTC
ATACTATTCTCATATTATCACTTTATCCAATTATTTTATATATTTTTCTT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_h09.b1 MSMg01no313_h09.b1 CHROMAT_FILE:
MSMg01no313_h09.b1 PHD_FILE: MSMg01no313_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:11 2005
         (299 letters)



>mm_chr14_69905744_69906441
          Length = 698

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%), Gaps = 2/299 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tagcaaagaactcaagagttggagggaggagaagaaggggaaattatataaatacagtac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcaaagaactcaagagttggagggaggagaagaaggggaaattatataaatacagtac 260

                                                                       
Query: 62  ttatatgtgaaatacatacaaaaataaatattaaaaaaa-tcaaaacatgaaaagaattc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttatatgtgaaatacatacaaaaataaatattaaaaaaaatcaaaacatgaaaagaattc 320

                                                                       
Query: 121 aagtcaggcccaactgcagatttgtgttgggtttacaacaagtgttcagcattttttttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aagtcaggcccaactgcagatttgtgttgggtttacaacaagtgttcagcattttttt-c 379

                                                                       
Query: 181 tacctctctctagggtggactgtgtgctcaatgtctatgtcacactcagtggattgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacctctctctagggtggactgtgtgctcaatgtctatgtcacactcagtggattgcaag 439

                                                                      
Query: 241 ggccacatttctaagacatgcctgcagccaggggtctagatgtgctgctctgccaatag 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggccacatttctaagacatgcctgcagccaggggtctagatgtgctgctctgccaatag 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space:   199810
Effective search space used:   199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)