BAC Information

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BAC

Clone NameMSMg01-313N11
Chromosome14 (Build37)
Map Location 110,605,965 - 110,606,808
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640892
Downstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313N11.T7 (MSMg01no313_n11.b1)MSMg01-313N11.TJ (MSMg01no313_n11.g1)
ACCAG435655AG435656
length1,2611,270
length of high quality
(start - end)		833 (56 - 888)816 (85 - 900)
definitionCHROMAT_FILE: MSMg01no313_n11.b1 PHD_FILE: MSMg01no313_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:00 2005CHROMAT_FILE: MSMg01no313_n11.g1 PHD_FILE: MSMg01no313_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTTTNNNNNNNNGGCACTGGGCGCTATAXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTGTCTGTACTCCAATCCCATAGTTATCTGGCAACA
GCCATTTAGGCCTGGCCCACTATAAAAGGGGCTGTTTGACCCCTCCCCCT
TACTCTCTTACTCTTGCCTCTCTGCCCTGCCCTCCTGCTCTCTCTTCCTC
CACATTCCTTTCTTCTCTCTCTCCATGAGGCCATGGCCAGCCTCTAATTC
TCTCCTCTCTGCCTTCTCTGCCTCTACTACCTTCCTAGCTCCCCTTCCCA
GACACTTCTCCCTGCAAAAGATATTTAACCTAAGGCCTGTCCTGAGAAAG
GGGGTAAGGTTTCACTCCTCACAGCTCTCAGCCATGGCAATAAAAGCCCT
CAAACCATGGATAGCTTCTTCACATAAAGATCCACCATACTGGTGCAATG
GAGCAGGTCTTCCTCTATAGAGTGCCATCTAACATCTTGCAAGAGGCCTC
CCTGGGCTCTTAGCCAAGTTTTCCACAAAGTCAAGCTGTCTGCATGAGCA
AGCCCAGGACTCTTGTTGCTGAGTCTCCTCCCCCTCTTTTTTCTTTGACC
TGGACTAGAATGTGCCCGAAGCCTGACACTCCATTCTCATCTTGGCATCT
TTGGCATCCAGAAGAATCTGGGCTGCACAAAGTGTGAGAACCTGTCAACC
TTGGAGTCCTTGTAGGCCTGGGGACCACAGAGCCCGGTCTCCTGTGGCAC
CCAGTAGAGTCTGTGATATCTGAGAGTCTGAGCCCACTCCAGCAAGTCAG
CAGGGACCTCAGACTGCACCTCCCCACCCTTGGAACAGGTCCTGGGGCTT
CTCACAGCCAGATGTCTGCCCAGCAGCAGTGTGGGGTATGCTCAGTCCAA
TGTCCTATGTCCTGCCTCCACAAGCAGCCCTACCCCCGTGNAGGAGATGC
TGGACACCATTTTAACCCACACTTACCCTCCTTTTACTTTGTAATTTTGC
AAATATTTTGGCCCATATATGAAACAGAATATTGTTCCAATTCCCCGGGA
AAAGGGAAAAAAATATAATATCTCCCCTTTGAACTGGGCATCCTCGGGGT
ATGGCGGTTTATGNTTAATANAAAAATTCTTACCATCCTCCTATATCTNT
ACTCTTTCCTTTCTTCTTTACTCTCTTATTTTATACATCTTTTCCTCTTA
TTCCCTTACTTTTCTCTTTTATACTATATCTCTCTCTTCTACCTTACTCC
AACATTCACCC

NNAATTTTNNNNNNNAATTCAAGCCATGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAGAGGAAAATC
ATTTTTAAAGTCTTTATCGATGCTGTAGTTACTGTGCTGTTATAAAATAG
CATGCTATTAGTTCTTAGAGTCTATTTATCATTAAAGGTCATAATACTGG
TGTCATGCTACTTCTAGTACACTATAGAGAAGAATATCATTTATATATAT
ATATATATACATATAATATGTCACTGGAAATATTAAGCTGTCTTATCATG
CTAATCATGTAATATAATCATGCCAGCTCTATTACTCTAATGCATTTTGC
TATATTAAGTATGACAGAACATAATTTACCTGGATAGTTAATAGGTATTT
CTATAAATTTGTTTAAGAGTGGACATTTTATAGATTATATATTGGTTGCA
TTCATTCCAAATTTTTTTCTAAATATTATGGTTACGATTTTTGTGTTTAT
AAAAAAAAAATTTCATTATCAAAGGAAATACTATAAAACAAGATATAAAT
GTATAAACATTAACCAATCATAAAAGCATATTTTATATAATACTATATAA
GTCATAAATTAAGTTTGACCGTATACATTAATTAATTTTTCTAAATCCTC
ATTTTCATATTCACTCATGCTTTACCTCCCTTGGTCCACTCTCCTTAACT
CCTTATGTCCTTACTGAGATTAGAATAGTTCACTTTTCTCATTATCCCCA
TTTCACATCTGACATATTATACTTAATATTTAAGTCATTAATTCCTGGTA
TATGTAAATAATCTTGAGGTTCCTTAACCAAATTGATAAACTATTTTAGC
AAAATAAAGCTCTGATAATGATCCCATATAATTGACATTTTTAAAAGAGC
TCTTAGTCATGAGATAACTTAATGTCCATGTTTATTACAGTGATAATGAG
CAATGTTAACATATAGGACCCACCTATCCATGTAAAAGTTAAAAACAGAT
CATGTAAAATTTTTACATACATTATGNACTTTTGTCCGCCATATTGAAAA
ATGAAATTACTTTTGTTTGCCGAAACTGGAATTATGAAAAAAAATGCCTT
TAGGGAATTAAAAAATTTCTCAAAGACTCTNTTTATTTTATATAACATAA
ATAAATTTATTTACCTCAACCCTTTTTTTTTCCCCCCTTATTTTCCCCTT
TCCTTTCCAAATTTTTTTAAAAGAAAACTCTTTGGGGAAAAATTCCCTCC
TCACCCGAAGGGGGAACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_n11.g1 MSMg01no313_n11.g1 CHROMAT_FILE:
MSMg01no313_n11.g1 PHD_FILE: MSMg01no313_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:00 2005
         (816 letters)



>mm_chr14_110605793_110607008
          Length = 1216

 Score = 1388 bits (718), Expect = 0.0
 Identities = 799/848 (94%), Gaps = 36/848 (4%)
 Strand = Plus / Plus

                                                                        
Query: 1    agtgaagaggaaaatcatttttaaagtctttatcgatgctgtagttactgtgctgttata 60
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 173  agtgaagaggaaaatcatttttaaagtctttattgatgcagtagttactgtgctgttata 232

                                                                        
Query: 61   aaatagcatgctattagttcttagagtctatttatcattaaaggtcataatactggtgtc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233  aaatagcatgctattagttcttagagtctatttatcattaaaggtcataatactggtgtc 292

                                                                        
Query: 121  atgctacttctagtacactatagagaagaatatcatttatatatatatatatatacatat 180
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 293  atgctacttctagtacgctatagagaagaatatcatttatatatatatatatatatatat 352

                                                                        
Query: 181  a----------------------------atatgtcactggaaatattaagctgtcttat 212
            |                            |||||||||||||||||||||||||||||||
Sbjct: 353  atatatatatatatatatatatatatataatatgtcactggaaatattaagctgtcttat 412

                                                                        
Query: 213  catgctaatcatgtaatataatcatgccagctctattactctaatgcattttgctatatt 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413  catgctaatcatgtaatataatcatgccagctctattactctaatgcattttgctatatt 472

                                                                        
Query: 273  aagtatgacagaacataatttacctggatagttaataggtatttctataaatttgtttaa 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  aagtatgacagaacataatttacctggatagttaataggtatttctataaatttgtttaa 532

                                                                        
Query: 333  gagtggacattttatagattatatattggttgcattcattccaaatttttttctaaatat 392
            ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 533  gagtggacattttatagattatatattggttgcgttcattccaaatttaattctaaatat 592

                                                                        
Query: 393  tatggttacgatttttgtgtttata----aaaaaaaaatttcattatcaaaggaaatact 448
            |||||||||||||||||||||||||    |||||    ||||||||||||||||||||||
Sbjct: 593  tatggttacgatttttgtgtttatattgcaaaaa----tttcattatcaaaggaaatact 648

                                                                        
Query: 449  ataaaacaagatataaatgtataaacattaaccaatcataaaagcatattttatataata 508
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 649  ataaagcaagatataaatgtataaacattaaccaatcacaaaagcatattttatataata 708

                                                                        
Query: 509  ctatataagtcataaattaagtttgaccgtatacattaattaatttttctaaatcctcat 568
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 709  ctatataagtcataaattaagtttgaccgtatacatttattaatttttctaaatcctcat 768

                                                                        
Query: 569  tttcatattcactcatgctttacctcccttggtccactctccttaactccttatgtcctt 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 769  tttcatattcactcatgctttacctcccttggtccactctccttaactcctcatgtcctt 828

                                                                        
Query: 629  actgagattagaatagttcacttttctcattatccccatttcacatctgacatattatac 688
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 829  actgagattagaatagttcacttttctcattatccccatttcacatgtgacatattatac 888

                                                                        
Query: 689  ttaatatttaagtcattaattcctggtatatgtaaataatcttgaggttccttaaccaaa 748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 889  ttaatatttaagtcattaattcctggtatatgtaaataatcttgaggttccttaaccaac 948

                                                                        
Query: 749  ttgataaactattttagcaaaataaagctctgataatgatcccatataattgacattttt 808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  ttgataaactattttagcaaaataaagctctgataatgatcccatataattgacattttt 1008

                    
Query: 809  aaaagagc 816
            ||||||||
Sbjct: 1009 aaaagagc 1016


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 816
Length of database: 1216
Length adjustment: 10
Effective length of query: 806
Effective length of database: 1206
Effective search space:   972036
Effective search space used:   972036
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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