Query= MSMg01no315_l18.b1 MSMg01no315_l18.b1 CHROMAT_FILE:
MSMg01no315_l18.b1 PHD_FILE: MSMg01no315_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:18 2005
(702 letters)
>mm_chr14_25977434_25978535
Length = 1102
Score = 1172 bits (606), Expect = 0.0
Identities = 676/706 (95%), Gaps = 15/706 (2%)
Strand = Plus / Minus
Query: 3 ggaattccagggggctacctctcccagaaacctccatgggtttaaaactcttcccaagtt 62
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ggaattccagggggctaattctcccagaaacctccatgggtttaaaactcttcccaagtt 639
Query: 63 cacaaaataggtggcacatttgagactcaaacctggacctatttgggcctcagagctcat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cacaaaataggtggcacatttgagactcaaacctggacctatttgggcctcagagctcat 579
Query: 123 gattgtaagctggtccttggggtcctggagagaacacaagcttacacatatacacatgac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gattgtaagctggtccttggggtcctggagagaacacaagcttacacatatacacatgac 519
Query: 183 caaggaatcagcatgaagagaccaagaaccccaaggctcccatcccactaccaccatgac 242
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 518 caaggaatcagcatgaagagaccaagaaccccaaggctcctgtcccactaccaccatgac 459
Query: 243 acacacaggaagtgactccttactgctctgagcacctgtttcccagctagtcagatggca 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 458 acacacaggaagtgactccttactgctctgagcaccagtttcccagctagtcagatggca 399
Query: 303 agattctttacgaatatctcttctccccattcccagaggaggactacatggtgtagaaat 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agattccttacgaatatctcttctccccattcccagaggaggactacatggtgtagaaat 339
Query: 363 gaagacag--cccccccc----caa-ccctgtctaccctgtcatggagaccaggaaagct 415
|||||||| | ||| |||||||||| |||||||||||||||||||||||
Sbjct: 338 gaagacagta-------ctatacaagccctgtctacgctgtcatggagaccaggaaagct 286
Query: 416 ctgtatagtgtatcgaggaggtaccatctccaccagcccagtccctcggcggaaagacaa 475
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctgtatagtgtatccaggaggta-catctccaccagcccagtccctcggcggaaagacaa 227
Query: 476 ctaggtccagggatgttcactccaccttcagagagggctgaataagcttgctctctgcag 535
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 226 ctaggtccagggatgttcactccaccttcagagagggctgaataatcttgctgtctgcag 167
Query: 536 gtctggagcactgctagtgtttgatacagtctctctgaatgactctttagtttgccttcc 595
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gtctggagcattgcgagtgtttgatacagtctctctgaatgactctttagtttgccttcc 107
Query: 596 ctaaattcttcccatatgctggtatgggctgttaaattactgttccccaaagagtactct 655
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 106 ctaaattcttcccatatgctggtatgggctgctaaattactgttccccaaagagttctct 47
Query: 656 acccagagtccttgggacactttctgtgagtctaaaacctgatcat 701
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 gcccagagtccttgggacactttctgtgagtctaaaacctgatcat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no315_l18.g1 MSMg01no315_l18.g1 CHROMAT_FILE:
MSMg01no315_l18.g1 PHD_FILE: MSMg01no315_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:18 2005
(289 letters)
>mm_chr14_25811335_25812023
Length = 689
Score = 499 bits (258), Expect = e-146
Identities = 279/286 (97%)
Strand = Plus / Plus
Query: 1 gttttgctttcatgaatgaatgtgcaccatgtgggtgaagtacccatgaaggccagaaga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttgctttcatgaatgaatatgcaccatgtgggtgaagtacccatgaaggccagaaga 260
Query: 61 gggcacaagatcctctggaactgcagttaccaagagttgtgatccattatgtgggtgcta 120
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 261 gggcacaagatcctctggaactgcagttaccaagagttgcgctccattatgtgggtgcta 320
Query: 121 agaattgaactcgggtcctctggaagaacagctagtgttcttaaccgccccaaagcctac 180
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 321 agaattgaactcaggtcctctggaagaacagctagtgttcttaactgccccaacgcctac 380
Query: 181 caccttgttggggattttacctctagacagaaatccaaagagctgcttttcccaggtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccttgttggggattttacctctagacagaaatccaaagagctgcttttcccaggtgac 440
Query: 241 tccaggttacacttcagtactgtagttttttgggaagacagactgg 286
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tccaggttacacttcagtactgtagttttctgggaagacagactgg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
