BAC Information

Click to search

BAC

Clone NameMSMg01-315M24
Chromosome14 (Build37)
Map Location 52,530,272 - 52,530,614
singlet/doubletsinglet
Overlap geneNdrg2
Upstream geneOsgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2
Downstream geneGm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315M24.T7 (MSMg01no315_m24.b1)MSMg01-315M24.TJ (MSMg01no315_m24.g1)
ACCAG436348AG436349
length740751
length of high quality
(start - end)		343 (73 - 415)632 (77 - 708)
definitionCHROMAT_FILE: MSMg01no315_m24.b1 PHD_FILE: MSMg01no315_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:24 2005CHROMAT_FILE: MSMg01no315_m24.g1 PHD_FILE: MSMg01no315_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCACTGCGCGGA
ATTCCTTAATTTCCCGACATTCATGATTTTTCTACCCTCAGATCCAATTC
CACCGTCATATTTCCCTAAAGACCCATTAATCCTGTTTTCAACAGATGGT
TCACTTATTTTTGCCTTTCCCTCTTTGAAGAACTCTCAGTATATTTCTCC
CCTGATGGTAAGCTCTTTTCTTACAGACTCACTCTGTGGAGACACCTTAT
GGCTCGGTCACTTTTACTGTGTATGGCACCCCCAAACCCAAACGCCCGGC
GATATTCACCTACCATGATGTAGGCCTCAACTGTAAGACCTTCATTTCTT
CTCCTGCCTCTTTCTGGGAAGAGCCATGGGAGGAGAAAGCCCAATGTGTG
TGTGTTTGGGGGAGACCCCCATATTTCAGTATGGTCAGACCGGGAGCCCA
GTGGTGGCACATCAGAGAGAGATTCTCCTCTAGTGTGGTGGCATCAGAGC
AAGAGGGTGGGTTCTGACGAGCGGATGCTTTTTCCTTCTGATTTTGTGGT
TGGGTGGGGAATGTGGGTTCTCTTTAGATAAGTCTTGCTTCCAGCCACTG
TTTCGGTTCGGGGATATGCAAGAGATCATACAGAACTTCGTGCGGGTTCA
TGTGGATGCCCCTGGCATGTAAGAGGGGGCGCCTGTGTTTCCTCTGGGGT
AAGAATGAGTTCCTTACTACACATCGTTGTGTTGTGTTGT

NCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTTTTCCTTTCTTTTATAT
TTCTAAATATTTTCCTTTATAATCCTAAACTCCAGATTTTATTCCTCTCC
TGGTCCACTCCCATACCATATCCCATACCTTCAACCCACACCCCTGTGTC
CACAGGATGACCCCACACCCGCGCCCACCCCACCAGACCTTTGAACTCTC
TAGGGCCTCCATTCTCTTGAGGCTTATGTGTATTTTCTCTGACTGAATCC
AGACCTGGCAGTCCTCTGCTGTATATATTTTGGGGACCTCATAACAGCTG
TTGTATGCAGCCTGTTTGGTATTGCTGTGTCTGAGAGATCTCCAGGGTCC
AGGTTTACTGAGTGTTCCGCCCCTCCAACAGAGCTGCCCCCCTCCTCAGC
TTCTTCCAGCTTTCCAACAACAGGGGTAGCAGCTTTCCATAATTCAACCA
CAGGGGTCAGCATACAACCAATGGTTAGAAGCACTGACCACCAAAGAACT
GCTAAACCTGATATACAACTTCAGCAAAGTGGCTAGATATAAATTACATC
AAACCAATCAGTATCCTTCTTTTACTCAAAAAATAAACAGTCTGAGAAAG
AAATTAGGGAAACCACATCCTTCTCAATAGTCACAAACAAAAGAAAATAC
CTTGAAGGTGACTCTAACAAGCAAGTGAAAGATCTGTATGACAAGAACTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_m24.b1 MSMg01no315_m24.b1 CHROMAT_FILE:
MSMg01no315_m24.b1 PHD_FILE: MSMg01no315_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:24 2005
         (343 letters)



>mm_chr14_52530072_52530814
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatttttctaccctcagatccaattccaccgtcatatttccctaaagacccattaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atgatttttctaccctcagatccaattccaccgtcatatttccctaaagacccattaatc 484

                                                                       
Query: 61  ctgttttcaacagatggttcacttatttttgcctttccctctttgaagaactctcagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctgttttcaacagatggttcacttatttttgcctttccctctttgaagaactctcagtat 424

                                                                       
Query: 121 atttctcccctgatggtaagctcttttcttacagactcactctgtggagacaccttatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atttctcccctgatggtaagctcttttcttacagactcactctgtggagacaccttatgg 364

                                                                       
Query: 181 ctcggtcacttttactgtgtatggcacccccaaacccaaacgcccggcgatattcaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctcggtcacttttactgtgtatggcacccccaaacccaaacgcccggcgatattcaccta 304

                                                                       
Query: 241 ccatgatgtaggcctcaactgtaagaccttcatttcttctcctgcctctttctgggaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccatgatgtaggcctcaactgtaagaccttcatttcttctcctgcctctttctgggaaga 244

                                                      
Query: 301 gccatgggaggagaaagcccaatgtgtgtgtgtttgggggaga 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gccatgggaggagaaagcccaatgtgtgtgtgtttgggggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |