BAC Information

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BAC

Clone NameMSMg01-317K22
Chromosome14 (Build37)
Map Location 36,970,121 - 36,970,778
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317K22.T7 (MSMg01no317_k22.b1)MSMg01-317K22.TJ (MSMg01no317_k22.g1)
ACCAG437684AG437685
length731729
length of high quality
(start - end)
690 (42 - 731)658 (72 - 729)
definitionCHROMAT_FILE: MSMg01no317_k22.b1 PHD_FILE: MSMg01no317_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:43 2005CHROMAT_FILE: MSMg01no317_k22.g1 PHD_FILE: MSMg01no317_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATGACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCTGCAATACCTCTCATGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGAT
ACCCAAGATATAAGATGCAATTTCCTAAACACATGAAACTCAAGAAAAAT
GAAGTCTGAAGTGTGGATACTATGCCCCTCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTATTTCCGAAATTCACTCTGTAGACCAGGCTGGCCTCGAAC
TCAGAAATTCTCCTGCCTCTGCCTTCCAACTGATAGGATTAAAGGCATGT
GCCACCACACCCAGCTTGCAGGCTTACTTTCTATACAGCAATTAGATACT
CATTCCCACTATCCTTCCTTTGATGAGAAACTTCAGACTGAGAAAGGGAT
TCACCATTCTAGGAAGATGGGAAAAAATAGCCCAGGAACTTGAAAGTATG
GAGAGCCATTTTGTGTTCCAGTCTTCAGGCAAGATCACCCAAAAACGATT
TTAAAATACAACCCTATAGTCAGAAAAATCCCCAGTACATGATTTGTACT
GTCTTCATTCTGTATTTCACAGTTTCCACTTAGTTCTAGGAAATTCTGTT
CAAATACCCCAGTGGATTCCTAAAACACTTGATAGTAGTGAATGCTGTAG
ATACTGTGTTGTAAACCACCCACACTTACTTATTTTTAAATATAATGCAT
AAATTAGGCACATTGCTAGATTAACAATACACGGCAATTAATTGGTTTAA
TGTTGGACATCTGGAATTTCCTCTAAATTCTACCTGTTGAATTCTTGGTT
ATAACATGTTTTGCTACTGAAGCTGGTAGATACATCCTTTAGGAGATGGA
AGGAAGTTAGGTTATAGGGTGTGCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_k22.g1 MSMg01no317_k22.g1 CHROMAT_FILE:
MSMg01no317_k22.g1 PHD_FILE: MSMg01no317_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:43 2005
         (658 letters)



>mm_chr14_36969921_36970978
          Length = 1058

 Score = 1265 bits (654), Expect = 0.0
 Identities = 657/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactctgtagaccaggctggcctcgaactcagaaattctcctgcctctgccttccaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactctgtagaccaggctggcctcgaactcagaaattctcctgcctctgccttccaact 260

                                                                       
Query: 61  gataggattaaaggcatgtgccaccacacccagcttgcaggcttactttctatacagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataggattaaaggcatgtgccaccacacccagcttgcaggcttactttctatacagcaa 320

                                                                       
Query: 121 ttagatactcattcccactatccttcctttgatgagaaacttcagactgagaaagggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagatactcattcccactatccttcctttgatgagaaacttcagactgagaaagggatt 380

                                                                       
Query: 181 caccattctaggaagatgggaaaaaatagcccaggaacttgaaagtatggagagccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccattctaggaagatgggaaaaaatagcccaggaacttgaaagtatggagagccattt 440

                                                                       
Query: 241 tgtgttccagtcttcaggcaagatcacccaaaaacgattttaaaatacaaccctatagtc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgttccagtcatcaggcaagatcacccaaaaacgattttaaaatacaaccctatagtc 500

                                                                       
Query: 301 agaaaaatccccagtacatgatttgtactgtcttcattctgtatttcacagtttccactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaaatccccagtacatgatttgtactgtcttcattctgtatttcacagtttccactt 560

                                                                       
Query: 361 agttctaggaaattctgttcaaataccccagtggattcctaaaacacttgatagtagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttctaggaaattctgttcaaataccccagtggattcctaaaacacttgatagtagtga 620

                                                                       
Query: 421 atgctgtagatactgtgttgtaaaccacccacacttacttatttttaaatataatgcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgctgtagatactgtgttgtaaaccacccacacttacttatttttaaatataatgcata 680

                                                                       
Query: 481 aattaggcacattgctagattaacaatacacggcaattaattggtttaatgttggacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattaggcacattgctagattaacaatacacggcaattaattggtttaatgttggacatc 740

                                                                       
Query: 541 tggaatttcctctaaattctacctgttgaattcttggttataacatgttttgctactgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggaatttcctctaaattctacctgttgaattcttggttataacatgttttgctactgaa 800

                                                                     
Query: 601 gctggtagatacatcctttaggagatggaaggaagttaggttatagggtgtgcctctg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctggtagatacatcctttaggagatggaaggaagttaggttatagggtgtgcctctg 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)