BAC Information

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BAC

Clone NameMSMg01-317O11
Chromosome14 (Build37)
Map Location 123,424,530 - 123,424,867
singlet/doubletsinglet
Overlap genenone
Upstream geneTimm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneVgcnl1, Itgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317O11.T7 (MSMg01no317_o11.b1)MSMg01-317O11.TJ (MSMg01no317_o11.g1)
ACCAG437846AG437847
length770733
length of high quality
(start - end)
294 (129 - 422)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no317_o11.b1 PHD_FILE: MSMg01no317_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:58 2005CHROMAT_FILE: MSMg01no317_o11.g1 PHD_FILE: MSMg01no317_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCTTTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTCCTATATATATTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGTAGTTTCA
TGAGGTCCCATTTGTGAATTCTTGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTCCCCCTGTGTCTTTATCTTCGAGGCTTTTCCCTAC
TTTCTCCTCTATAAGTTTCTTGTGTCTCTGGCTTTATGTGGAGTTCCTCA
ATCCACTTAGATTTGACCACACACCCCACGATCCCGTGAAGAATCCTGTG
TGGGTCCTTGCGGGTATCCGGAGACTCCGCGGGCAAGGCACCCGGGTGCT
GGAGTGGACAAGATTTACCATCTTANAGATACAGTTTGGTTTGTACTTTC
AATCCATTACAGTTAGGGAGATCACAGAAGCAGGAGCTGGAAGGAACTGG
TCACATGTCATCCACGGGCAGCAAGCAGGATTGAAGAGTACTTGTGCTGG
ATTTATTGTTTTCGTTTTTCACAGTTCAGTGTCCAAAGAATGAGTGAGCA
GGTCTCTCCACCTCAGTTAATCTAGTTAAGATATTTTTGGGGCAGTGGTA
GCACATGCCTTTTATCCAGG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTACTGTGCAAAACTCACATGATCT
TTGCCTCTTGGGGCTTAGAAGAGGGGAGGGATAATGCTTAGGGCTCATGG
GTACTACCACCTGAGAAAATGGATTCTACAGGCTGGAGTGATTCTCAAAT
ATCCTTTGAAGAGTCATTTGAATCTCTAAAAACTAGATGGTAGAAGTAGA
GAGTATTCTCTCCATTAAGCCTCTTGGAATTCCGGGGCTGGGTATGGTTT
GTGGTGGTTAGTCATGATTATTACCTTGAATTGTTAGGTTGTGGAACACC
CACAAACTTAGTACAACATTCTTCTTAGTGTGCACTGTTTCTAGACAGTT
TCTGGATCACAGACCCTTAAACCAAATCGATAGACTAATTCTTTGATGAG
TTTCACATTTTCAGTTGTCAGACTAAAGGTTCTGGAATTTACGTACCCAT
TTCTGCTATTAGCAAGGAAGTTACAGTCAGTCTGTAGGCTACAAGAGTGT
TTCAGAATTAGTTTCTTTGTTCTTCATTTTGTTTTCTCCTTTGACTGTGT
TGTCATTGACTAGATGGTCAGTAGTTCACTGTTCTCAAATCAGTTCCTTA
TAAAACTATTCTATGATCAAAGGATATGATTTCATGATAAGGTGAATTTG
GAATATGGATCCAAGTTTTCCCCCTCACTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_o11.g1 MSMg01no317_o11.g1 CHROMAT_FILE:
MSMg01no317_o11.g1 PHD_FILE: MSMg01no317_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:58 2005
         (338 letters)



>mm_chr14_123424330_123425067
          Length = 738

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtactgtgcaaaactcacatgatctttgcctcttggggcttagaagaggggagggataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtactgtgcaaaactcacatgatctttgcctcttggggcttagaagaggggagggataa 260

                                                                       
Query: 61  tgcttagggctcatgggtactaccacctgagaaaatggattctacaggctggagtgattc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttagggctcatgggtactaccacccgagaaaatggattctacaggctggagtgattc 320

                                                                       
Query: 121 tcaaatatcctttgaagagtcatttgaatctctaaaaactagatggtagaagtagagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaatatcctttgaagagtcatttgaatctctaaaaactagatggtagaagtagagagt 380

                                                                       
Query: 181 attctctccattaagcctcttggaattccggggctgggtatggtttgtggtggttagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attctctccattaagcctcttggaattccggggctgggtatggtttgtggtggttagtca 440

                                                                       
Query: 241 tgattattaccttgaattgttaggttgtggaacacccacaaacttagtacaacattcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattattaccttgaattgttaggttgtggaacacccacaaacttagtacaacattcttc 500

                                                 
Query: 301 ttagtgtgcactgtttctagacagtttctggatcacag 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtgtgcactgtttctagacagtttctggatcacag 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)