BAC Information

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BAC

Clone NameMSMg01-318A07
Chromosome14 (Build37)
Map Location 112,465,660 - 112,466,037
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043494, Slitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318A07.T7 (MSMg01no318_a07.b1)MSMg01-318A07.TJ (MSMg01no318_a07.g1)
ACCAG437929AG437930
length729778
length of high quality
(start - end)
375 (43 - 417)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no318_a07.b1 PHD_FILE: MSMg01no318_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:06 2005CHROMAT_FILE: MSMg01no318_a07.g1 PHD_FILE: MSMg01no318_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAATAACTTTTACACGTTTGTACAAATAAGAATAGGGGCTAGAGGATG
GTTCAGTCTTTACAAGCAAACAAACAACAAAAAGCAGACTTGTTCATCTT
TGAGAGAACCTGACTTTGTTGGCCAAAACCAACATGTTGGCTCACAAATC
TCTATAACTCCAATTTTAGGAGATTTGAAATCCTTTTGTAATCTACATGG
ACACCACATCTACGTCCAGGGAAAACACTCACACACAAAAGAACATACAG
TTTTTAATGAAATATGTTGTCTTTAATTTTCTTTCTGCCCTCTTCCACTC
TCTTTTGTAGTGTTTCTTCCCTTTGCCCCTTCTGCTCTCTGCTAGTCCCT
GAATCCTATGCTAGGTAACCCCCCCCCCACAGTTATATTTATAGTTAGTT
ATAGTTATAGTTATAGTTATAGTTATAGTTATAGTTATAGCTACAGTACC
AAAGTGTGCTTTGACCTACATTTCAGTGTTTAGGGGCTTATGTTTTATAT
ATGTAAAGTCTTTTCAATGATTGTGGAATAAATTGAATTATCTTAACTTG
TACTTGAGTTTTACAGTCTGGATTTTGCATAATAATTTTGCCTGTGGTAA
TTTCTTCGTATTATTAATTATGTTCTTATTANACATTGGACTTAAAGACA
CTCAAAACTACAAACAATGGTTTTATGCT
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGTGCTGGGAAAGGGGGTTAGGAAAGAT
TATAAGACATGAGGAAATTCTTCTGTCAGACTGTATGTTTTAGAAATAAC
TGCCTTAACAAGATCTGAACGATGATAATGCCAACACATATGCTAATGCA
GAAGGGAAAATTTCATGATATCTCATGCCTAGCCAAAGAAATACAGGCAT
CTAATGAATGTTGAAAGAATTAGCTGCCCTCATGGCTGAGCTGTCTAAGT
GGTCAATGTTGAAAGTATATACATACAAAAAATGACTCAGGTTTTATTTA
ACTATTCATACAACACATTGAACATGTATGTACACACAGGAAGTAGTCAT
TACTTTGTTGAAAAGAAACCCCCCCCCTTGTTTGAAGGAATTTGGGGAGG
GGAGGGGGACAGAAGGAATTGGTTATGAAAGTAAAAAAAAATGGAATAAG
GGATTCAATTCCTTCTTGCTCTTTTATTTTTCTGGGTCTTATCTTTCCTT
CGTCCCGCGGTTATTTATTTTTCTCCATTCTCTTCCGCCTTTCCGTTTCT
CTTAATCTTCTATCATTACACTTTCCTTTACTCCTCCTTCCCACCTTTTG
TTGCCCCTCATACTCTTCTCTTTTCTCTCCTTCCCTCACGCGCTTATTTT
CTTTTAGCCCCTTCTTTTTCTCTCCCTCTTCTATCTCCTCCCCCTCCTCT
CTTTTCACGTTCTCATCTCCTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_a07.b1 MSMg01no318_a07.b1 CHROMAT_FILE:
MSMg01no318_a07.b1 PHD_FILE: MSMg01no318_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:06 2005
         (375 letters)



>mm_chr14_112465463_112466237
          Length = 775

 Score =  648 bits (335), Expect = 0.0
 Identities = 365/379 (96%), Gaps = 9/379 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaataacttttacacgtttgtacaaataagaataggggctagaggatggttcag 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattcaaataacttttaca-gtttgtacaaataagaataggggctagaggatggttcag 256

                                                                       
Query: 65  tctttacaag----caaacaaacaacaaaaagcagacttgttcatctttgagagaacctg 120
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctttacaagcaaacaaacaaacaacaaaaagcagacttgttcatctttgagagaacctg 316

                                                                       
Query: 121 actttgttggccaaaaccaacatgttggctcacaaatctctataactccaattttaggag 180
           | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 317 attttgttggccaaaaccaacatgttgactcacaaatgtctataactccaattttaggag 376

                                                                       
Query: 181 atttgaaatccttttgtaatctacatggacaccacatctacgtccagggaaaacactcac 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atttgaaatccgtttgtaatctacatggacaccacatctacgtccagggaaaacactcac 436

                                                                       
Query: 241 a----cacaaaagaacatacagtttttaatgaaatatgttgtctttaattttctttctgc 296
           |    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 437 atacacacaaaagaacatacagtttttaatgaaatatgttgtctctaattttctttctgc 496

                                                                       
Query: 297 cctcttccactctcttttgtagtgtttcttccctttgccccttctgctctctgctagtcc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cctcttccactctcttttgtagtgtttcttccctttgccccttctgctctctgctagtcc 556

                              
Query: 357 ctgaatcctatgctaggta 375
           |||||||||||||||||||
Sbjct: 557 ctgaatcctatgctaggta 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)