MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-318K05
Chromosome	14 (Build37)
Map Location	46,979,914 - 46,980,251
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
Downstream gene	LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Styx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56291 MGI:1891150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gnpnat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54342 MGI:1858963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plekhc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218952 MGI:2385001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG382884 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382884 MGI:3645516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 ESTs, 4 Proteins

name	Ddhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114874 MGI:2150302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	EG637379 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:637379 MGI:3646634
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 433 ESTs, 10 Proteins

name	LOC666834 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 90 ESTs, 4 Proteins pseudo : _no_value

name	LOC100041685 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041685
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC625377 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625377
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 7 Proteins pseudo : _no_value

name	LOC218963 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:218963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs pseudo : _no_value

name	LOC100041724 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041724
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Bmp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12159 MGI:88180
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041732 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041732
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100041754 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041754
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Cdkn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72391 MGI:1919641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins

name	Cnih (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12793 MGI:1277202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gmfb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:63985 MGI:1927133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cgrrf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68755 MGI:1916368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Samd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74480 MGI:1921730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gch1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14528 MGI:95675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdhd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218973 MGI:2443514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Socs4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67296 MGI:1914546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670795 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	C130032J12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218975 MGI:2444022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Styx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130655 GeneID:56291 MGI:1891150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoserine/threonine/tyrosine interaction protein transcript_id : NM_019637.3

name	Gnpnat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130756 GeneID:54342 MGI:1858963
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucosamine-phosphate N-acetyltransferase 1 transcript_id : NM_019425.2

name	Plekhc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906178 GeneID:218952 MGI:2385001
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin homology domain containing, family C (with FERM domain) member 1 transcript_id : NM_146054.2

name	EG382884 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397038 GeneID:382884 MGI:3645516
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 ESTs, 4 Proteins product : predicted gene, EG382884 transcript_id : XM_356730.5

name	Ddhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955151 GeneID:114874 MGI:2150302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DDHD domain containing 1 transcript_id : NM_001039106.2

name	Ddhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955223 GeneID:114874 MGI:2150302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DDHD domain containing 1 transcript_id : NM_176845.4

name	Ddhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955211 GeneID:114874 MGI:2150302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DDHD domain containing 1 transcript_id : NM_001042719.1

name	EG637379 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149265484 GeneID:637379 MGI:3646634
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 433 ESTs, 10 Proteins product : predicted gene, EG637379, transcript variant 2 transcript_id : XM_925735.3

name	LOC100041724 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265489 GeneID:100041724
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100041724 transcript_id : XM_001476890.1

name	Bmp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949822 GeneID:12159 MGI:88180
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bone morphogenetic protein 4 transcript_id : NM_007554.2

name	LOC100041732 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265493 GeneID:100041732
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041732 transcript_id : XM_001476910.1

name	LOC100041754 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265495 GeneID:100041754
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041754 transcript_id : XM_001476947.1

name	Cdkn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94397016 GeneID:72391 MGI:1919641
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins product : cyclin-dependent kinase inhibitor 3, transcript variant 2 transcript_id : XM_899867.2

name	Cnih (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27545444 GeneID:12793 MGI:1277202
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cornichon homolog (Drosophila) transcript_id : NM_009919.1

name	Gmfb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11993947 GeneID:63985 MGI:1927133
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glia maturation factor, beta transcript_id : NM_022023.1

name	Cgrrf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351150 GeneID:68755 MGI:1916368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell growth regulator with ring finger domain 1 transcript_id : NM_026832.3

name	Samd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82617645 GeneID:74480 MGI:1921730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sterile alpha motif domain containing 4 transcript_id : NM_001037221.1

name	Samd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82617651 GeneID:74480 MGI:1921730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sterile alpha motif domain containing 4 transcript_id : NM_028966.2

name	Gch1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130997 GeneID:14528 MGI:95675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP cyclohydrolase 1 transcript_id : NM_008102.3

name	Wdhd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254223 GeneID:218973 MGI:2443514
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat and HMG-box DNA binding protein 1 transcript_id : NM_172598.2

name	Socs4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49355821 GeneID:67296 MGI:1914546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of cytokine signaling 4 transcript_id : NM_080843.2

name	LOC670795 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149265611 GeneID:670795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical LOC670795 transcript_id : XM_001478571.1

name	C130032J12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352501 GeneID:218975 MGI:2444022
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C130032J12 gene transcript_id : NM_178684.4

name	Styx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46852143 CCDS:CCDS26975.1 GeneID:56291 MGI:1891150
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 note : protein tyrosine phosphatase-like unspliced c-terminal product and spliced c-terminal end STYX; STNS (alternatively spliced intron of Styx) product : phosphoserine/threonine/tyrosine interaction protein protein_id : NP_062611.2

name	Gnpnat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506761 CCDS:CCDS26976.1 GeneID:54342 MGI:1858963
definition	GO_component : GO:0005793 - ER-Golgi intermediate compartment [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005770 - late endosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity [Evidence IDA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006048 - UDP-N-acetylglucosamine biosynthesis [Evidence TAS] codon_start : 1 note : glucosamine-6-phosphate acetyltransferase product : glucosamine-phosphate N-acetyltransferase 1 protein_id : NP_062298.1

name	Plekhc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906179 CCDS:CCDS26977.1 GeneID:218952 MGI:2385001
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA] codon_start : 1 note : mitogen inducible 2 product : pleckstrin homology domain containing, family C (with FERM domain) member 1 protein_id : NP_666166.2

name	EG382884 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38076099 GeneID:382884 MGI:3645516
definition	codon_start : 1 product : hypothetical protein protein_id : XP_356730.1

name	Ddhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111955152 CCDS:CCDS26978.1 GeneID:114874 MGI:2150302
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; phosphatidic acid-preferring phospholipase A1 product : DDHD domain containing 1 isoform 1 protein_id : NP_001034195.2

name	Ddhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111955224 GeneID:114874 MGI:2150302
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; phosphatidic acid-preferring phospholipase A1 product : DDHD domain containing 1 isoform 2 protein_id : NP_789815.3

name	Ddhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111955212 GeneID:114874 MGI:2150302
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; phosphatidic acid-preferring phospholipase A1 product : DDHD domain containing 1 isoform 3 protein_id : NP_001036184.1

name	EG637379 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149265485 GeneID:637379 MGI:3646634
definition	codon_start : 1 product : similar to 60S ribosomal protein L9 isoform 2 protein_id : XP_930828.3

name	LOC100041724 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265490 GeneID:100041724
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476940.1

name	Bmp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949823 GeneID:12159 MGI:88180
definition	GO_function : GO:0005125 - cytokine activity [Evidence ISS] [Evidence IEA]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030509 - BMP signaling pathway [Evidence IDA]; GO:0051216 - cartilage development [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0045165 - cell fate commitment [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0021904 - dorsoventral neural tube patterning [Evidence IDA]; GO:0030218 - erythrocyte differentiation [Evidence IDA]; GO:0001747 - eye development (sensu Mammalia) [Evidence IGI]; GO:0030900 - forebrain development [Evidence IGI]; GO:0007281 - germ cell development [Evidence IMP]; GO:0040007 - growth [Evidence IEA]; GO:0007507 - heart development [Evidence IMP]; GO:0030324 - lung development [Evidence IMP]; GO:0007500 - mesodermal cell fate determination [Evidence IMP]; GO:0001656 - metanephros development [Evidence IDA] [Evidence IMP]; GO:0045662 - negative regulation of myoblast differentiation [Evidence ISS]; GO:0045843 - negative regulation of striated muscle development [Evidence ISS]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IGI] [Evidence IDA]; GO:0001503 - ossification [Evidence IEA]; GO:0001649 - osteoblast differentiation [Evidence IDA]; GO:0030501 - positive regulation of bone mineralization [Evidence ISS]; GO:0045597 - positive regulation of cell differentiation [Evidence IDA]; GO:0045778 - positive regulation of ossification [Evidence ISS]; GO:0045669 - positive regulation of osteoblast differentiation [Evidence ISS]; GO:0001934 - positive regulation of protein amino acid phosphorylation [Evidence ISS]; GO:0045595 - regulation of cell differentiation [Evidence IGI]; GO:0001501 - skeletal development [Evidence IMP] [Evidence IDA]; GO:0051145 - smooth muscle cell differentiation [Evidence IDA]; GO:0021978 - telencephalon regionalization [Evidence IDA]; GO:0009888 - tissue development [Evidence IGI]; GO:0001657 - ureteric bud development [Evidence ISS] [Evidence IMP] [Evidence IDA] codon_start : 1 product : bone morphogenetic protein 4 protein_id : NP_031580.2

name	LOC100041732 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265494 GeneID:100041732
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476960.1

name	LOC100041754 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265496 GeneID:100041754
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476997.1

name	Cdkn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82953890 GeneID:72391 MGI:1919641
definition	codon_start : 1 product : cyclin-dependent kinase inhibitor 3 isoform 2 protein_id : XP_904960.1

name	Cnih (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27545445 CCDS:CCDS26980.1 GeneID:12793 MGI:1277202
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 exception : mismatches in translation product : cornichon homolog protein_id : NP_034049.1

name	Gmfb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11993948 GeneID:63985 MGI:1927133
definition	GO_function : GO:0008083 - growth factor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glia maturation factor, beta protein_id : NP_071306.1

name	Cgrrf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51467882 CCDS:CCDS26981.1 GeneID:68755 MGI:1916368
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence IEA] codon_start : 1 product : cell growth regulator with ring finger domain 1 protein_id : NP_081108.2

name	Samd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82617646 CCDS:CCDS26982.1 GeneID:74480 MGI:1921730
definition	GO_component : GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0030371 - translation repressor activity [Evidence ISS] GO_process : GO:0045946 - positive regulation of translation [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : sterile alpha motif domain containing 4 isoform 1 protein_id : NP_001032298.1

name	Samd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037381 CCDS:CCDS26983.1 GeneID:74480 MGI:1921730
definition	GO_component : GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0030371 - translation repressor activity [Evidence ISS] GO_process : GO:0045946 - positive regulation of translation [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : sterile alpha motif domain containing 4 isoform 2 protein_id : NP_083242.1

name	Gch1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679967 CCDS:CCDS26984.1 GeneID:14528 MGI:95675
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0019438 - aromatic compound biosynthesis [Evidence IEA]; GO:0006729 - tetrahydrobiopterin biosynthesis [Evidence IEA] codon_start : 1 product : GTP cyclohydrolase 1 protein_id : NP_032128.1

name	Wdhd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254224 GeneID:218973 MGI:2443514
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : WD repeat and HMG-box DNA binding protein 1 protein_id : NP_766186.2

name	Socs4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49355822 CCDS:CCDS26985.1 GeneID:67296 MGI:1914546
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0001558 - regulation of cell growth [Evidence IEA] codon_start : 1 note : suppressor of cytokine signaling 7 product : suppressor of cytokine signalling 4 protein_id : NP_543119.2

name	LOC670795 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149265612 GeneID:670795
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478621.1

name	C130032J12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520075 GeneID:218975 MGI:2444022
definition	codon_start : 1 product : hypothetical protein LOC218975 protein_id : NP_848799.1

name	LOC100041685 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041685
definition	number : 3 pseudo : _no_value

name	LOC100041685 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041685
definition	number : 2 pseudo : _no_value

name	LOC100041685 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041685
definition	number : 1 pseudo : _no_value

name	LOC666834 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265603 GeneID:666834
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 90 ESTs, 4 Proteins product : similar to fusion protein: ubiquitin (bases 43_513); ribosomal protein S27a (bases 217_532) pseudo : _no_value transcript_id : XR_033656.1

name	LOC625377 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149265487 GeneID:625377
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 7 Proteins product : similar to SMT3 isopeptidase 1 pseudo : _no_value transcript_id : XR_032952.1

name	LOC218963 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:84872148 GeneID:218963
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin pseudogene pseudo : _no_value transcript_id : NR_002856.1

clone name	MSMg01-518K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048N16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-049G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353H24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-540F18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-445O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276M01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-353J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066B24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-183J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088E23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-318K05.T7 (MSMg01no318_k05.b1)	MSMg01-318K05.TJ (MSMg01no318_k05.g1)
ACC	AG438382	AG438383
length	871	724
length of high quality (start - end)	73 (43 - 115)	338 (72 - 409)
definition	CHROMAT_FILE: MSMg01no318_k05.b1 PHD_FILE: MSMg01no318_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:51 2005	CHROMAT_FILE: MSMg01no318_k05.g1 PHD_FILE: MSMg01no318_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:51 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTAGTACGCGGAATTC ATTCAAATAACACCCTTTGCTTGGAAAATTATTAGAAGGTTTTTTTTGGG GGGGGGAAGAAGAGTTTTCCCCTTCTCTTATTCACTTATTAAATCCACCC TTATCCCGCTCTCTTTTATATATCTCCCCATAAATACTCCATAGACGTCA GACAACCTCACATTATAAAAATATAAACATCAAAACGAGTCATTTATGTG GCTATTATATTCAACACTGGTGTTAGAATTACGGAGAGGGGGGGGGGGGT AAAAGATACCGCTCTTGTGTGGGGTTTGTGAGCACCGACATTTTTTTATT CTACGCGCGCATATATTGGACACGCCGTGCAGCACGGGGATAAGGGCCGC ACCAGTGGGGCGTTGAAGACCATTAACTAGCCTTTTAAGTGGTATTTGGG GTTTGCCCCAAACAGTCCCCCCCNTATTTTATAGTTATTGTCTTGTGTTT TTATAGCGGCACTTCCGCACGGTGTATTTCTGCTTCCATCTCTCTCCCTA TGTCTACCATTTTTTTTCCCTTTATTGGTTCCCGTCGCTGGGAGACCTTT ACTGATGTTTTCCGTTCAAAATACTATCATATCGCACAAGACGTATTTTG TGTCGGTAATATACATGAGCGCCGCGGACAGGGTCTAAGTAGGCGCGAGG GTTCTGTATATTACTTTCATCCTACTCTTTTTTGGTGACGTTGCAGAAGT TCCCGAGGTTGTCATTCACTTTGTGTTTCTCTAGAGTTGGATAGTTTGAC GTTATTATTGACAGAGCTTTGTAGACCAATATGGAGAATTCCTATGTGAC ACGATTCGTTTAGCTGTGGAT	ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXACTAGTCTCCCTGTGAGACAAGAGCTCCA TGCCCATTGCATCTCCCCCGCATCTTCAGCTTTGAGCAGAGTGCCTTAAC TCTGGTAAGTGCTCCATGTGTAATGCATTGAATGTATGAGTAAGACGGGA TTCAGACACAGGGCTGAGATAGGGCAGTTACAGAGAACTTGGCCGTGTAA AGATGAGGACTTCAATCCCAGCCCCCAGCAGAGTGGGGTGTGTTGCAATT CCAGGGCTGGGGAGGCAGAGAGTAATGGACTTCTCCAGTTTGCTGGCCAC CAAGTCTAGCTTAATTGCTGAAAACCGGGTCTTAGCAAAAGACTCTATTT CAACAAAACAAGTCGAAAAACCACCCCCACCTTTTTAGAGGAATGACAAC CGAGTTCTGCCTGCACACCCATGTTGCATTCCCAGTTGTATGACGTGAGT GCAAACCCCAATACCAGGAATTACTTTTGAATCATCATAGCTAGATGATG AACAGTACCTAGTGGATGTTTGAAGAGGAAAGAGGATATTCTGAATTTCC TTTTCGTGGAAACTTTCTCATAGAGACAGCTGCTGTGGCTTTTACATACG AAGTACTTCCACCCCCAAAGCTATTGCGTTAAAACATTCCCTCCCCCCAT CAAATTTGCCTCATACCTTATAGG
quality values	Open. Hide. 11 11 11 11 23 23 34 30 15 14 17 18 25 24 33 33 28 28 28 36 39 23 21 11 10 10 21 21 22 9 8 8 8 8 6 6 6 6 8 8 13 12 22 22 28 28 31 31 33 36 36 36 36 33 33 26 23 15 11 11 10 10 10 10 10 14 28 32 30 34 34 47 59 41 26 16 14 14 26 26 53 57 57 57 57 57 57 59 57 48 48 57 59 59 59 59 57 57 57 57 59 59 59 57 57 57 57 57 57 43 43 29 21 10 10 8 10 8 8 13 10 8 8 8 6 6 10 10 6 6 8 8 8 8 8 8 8 8 8 8 6 8 8 8 8 8 11 12 11 12 10 10 10 9 9 7 8 8 8 8 8 10 9 9 9 11 10 10 10 10 10 9 8 10 8 8 8 8 8 8 8 8 11 11 11 12 12 10 9 8 8 8 8 11 8 8 8 9 9 9 9 9 8 8 8 8 8 8 9 8 8 10 8 8 8 10 9 9 9 9 9 8 8 6 6 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 12 8 8 8 8 8 6 6 8 8 6 6 8 8 8 8 8 8 13 13 19 12 8 8 8 8 10 10 8 8 8 8 8 8 8 6 6 8 8 10 8 8 8 9 9 9 9 10 11 9 10 9 9 11 11 12 12 12 10 10 12 10 8 8 6 6 8 8 9 9 9 9 9 9 8 8 8 8 8 8 10 10 10 10 9 9 9 10 10 8 9 8 8 8 6 6 6 6 8 8 10 10 12 19 11 10 7 7 7 10 10 6 6 8 6 10 10 10 10 8 8 6 6 6 8 8 8 8 8 6 6 8 8 8 8 8 8 9 9 9 8 8 8 8 8 8 11 10 10 8 8 8 6 6 8 8 9 9 8 8 8 8 8 8 10 10 10 10 10 8 8 8 8 10 10 9 9 9 8 8 8 8 8 12 21 13 10 9 9 8 8 8 10 10 10 10 10 11 11 11 10 10 10 10 10 14 15 16 8 8 6 6 8 8 19 9 10 11 9 9 7 7 6 6 6 7 7 9 15 13 8 7 3 0 3 11 11 12 7 8 6 6 8 8 10 8 6 6 6 8 9 10 9 9 8 8 8 8 8 8 10 12 12 7 7 8 8 8 8 8 8 8 8 8 10 8 9 8 8 8 10 10 6 6 8 8 8 9 10 10 10 9 8 8 8 8 8 8 8 6 6 6 10 10 13 8 8 8 8 8 8 8 9 8 8 8 8 10 6 7 8 8 10 15 10 10 8 8 8 10 9 9 10 10 8 8 8 8 8 8 7 8 10 8 8 8 8 8 6 6 8 8 9 10 10 9 8 8 6 7 6 6 8 6 6 8 8 8 8 8 6 8 6 6 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 8 8 6 6 8 8 12 12 11 9 9 11 11 11 11 11 11 12 12 15 8 8 6 6 8 10 8 8 8 8 8 11 8 8 8 8 8 8 8 9 8 8 8 10 8 8 10 10 8 10 10 15 9 9 9 9 9 12 13 11 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 10 9 8 8 9 9 9 9 11 10 10 10 10 10 10 15 10 10 10 13 9 9 9 10 10 12 18 10 9 8 8 8 8 8 8 10 10 10 10 10 8 6 7 6 10 8 8 8 8 8 8 8 9 11 8 8 8 8 8 8 8 8 8 8 6 8 10 10 10 10 10 9 8 8 8 10 8 9 8 8 8 8 9 10 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 12 10 8 8 8 8 8 8 8 6 6 8 8 11 9 8 8 8 8 10 8 9 9 8 8 8 8 8 10 8 10 10 12 10 12 12 11 8 8 12 8 8 8 8 8 8 8 10 8 8 7 9 13 12 8 6 6 6 6 8 8 8 8 8 8	Open. Hide. 9 13 8 8 8 8 21 14 26 22 22 37 37 37 47 41 50 50 53 53 48 48 48 42 47 47 37 34 23 16 9 6 6 6 6 7 8 7 7 6 6 8 12 18 22 11 11 10 21 21 50 50 50 47 47 27 21 8 8 8 8 8 8 8 9 9 13 15 19 25 22 25 23 27 48 48 53 57 57 57 59 57 57 57 57 57 47 47 53 53 53 53 57 59 68 68 54 54 68 68 68 68 51 51 51 51 51 50 50 50 50 50 68 68 68 68 68 68 57 57 46 40 40 44 43 43 68 68 68 68 68 68 68 68 68 68 68 68 57 57 46 46 54 57 57 59 68 68 68 57 57 57 57 57 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 59 59 57 52 52 57 57 57 41 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 62 62 62 62 62 59 68 68 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 59 59 59 59 59 68 68 68 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 59 44 43 18 18 12 12 12 12 12 24 24 44 44 57 68 68 57 57 57 57 57 57 59 59 57 57 57 54 54 54 57 57 68 59 59 57 54 54 57 57 68 68 68 68 68 68 57 57 59 57 68 57 57 47 43 43 43 47 44 46 48 59 59 59 41 41 17 17 17 34 30 37 37 32 36 43 43 57 59 59 57 53 44 43 36 32 32 23 23 20 20 20 20 20 18 24 27 21 9 9 6 6 6 6 6 6 6 10 10 8 6 6 6 8 21 25 43 41 34 25 25 20 41 28 35 37 39 32 43 44 43 57 57 57 57 59 48 48 48 48 57 48 48 48 43 43 43 59 47 54 54 59 59 68 68 68 68 68 57 57 48 48 46 48 46 28 24 13 28 28 28 34 27 27 18 24 15 18 20 27 18 20 30 30 20 17 17 32 34 57 57 57 57 57 44 59 42 43 36 36 36 43 43 57 54 57 57 57 57 57 48 48 48 43 43 47 43 30 30 21 19 13 13 19 24 31 39 39 37 37 32 28 28 22 22 31 24 22 17 19 28 19 19 15 18 12 12 12 16 19 10 10 10 19 21 22 22 24 21 12 11 11 12 12 24 24 31 33 35 37 37 37 33 33 33 33 28 28 30 33 30 30 32 29 24 17 21 14 14 15 18 20 23 28 28 35 28 32 24 16 16 16 18 18 14 14 18 21 21 12 12 9 9 12 22 22 37 24 21 14 11 10 10 10 12 15 10 10 10 10 10 10 11 11 11 11 15 21 18 21 9 9 9 9 9 12 13 11 12 10 9 8 8 8 8 17 15 13 11 11 10 11 10 10 8 8 6 6 6 7 10 9 9 8 8 17 15 22 18 21 14 10 10 10 9 9 8 8 8 8 8 8 8 9 9 10 10 13 12 10 8 8 8 8 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no318_k05.g1 MSMg01no318_k05.g1 CHROMAT_FILE:
MSMg01no318_k05.g1 PHD_FILE: MSMg01no318_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:51 2005
         (338 letters)



>mm_chr14_46979913_46980650
          Length = 738

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagtctccctgtgagacaagagctccatgcccattgcatctcccccgcatcttcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 actagtctccctgtgagacaagagctccatgcccattgcatctcccccgcatcttcagct 280

                                                                       
Query: 61  ttgagcagagtgccttaactctggtaagtgctccatgtgtaatgcattgaatgtatgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttgagcagagtgccttaactctggtaagtgctccatgtgtaatgcattgaatgtatgagt 220

                                                                       
Query: 121 aagacgggattcagacacagggctgagatagggcagttacagagaacttggccgtgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aagacgggattcagacacagggctgagatagggcagttacagagaacttggccgtgtaaa 160

                                                                       
Query: 181 gatgaggacttcaatcccagcccccagcagagtggggtgtgttgcaattccagggctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gatgaggacttcaatcccagcccccagcagagtggggtgtgttgcaattccagggctggg 100

                                                                       
Query: 241 gaggcagagagtaatggacttctccagtttgctggccaccaagtctagcttaattgctga 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  gaggcagagaggaatggacttctccagtttgctggccaccaagtctagcttaattgctga 40

                                                 
Query: 301 aaaccgggtcttagcaaaagactctatttcaacaaaac 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 39  aaaccgggtcttagcaaaagactctatttcaacaaaac 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information